Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq145 116 3e-21 seq44 116 3e-21 seq317 102 7e-17 seq147 102 7e-17 seq32 91.5 1e-13 seq125 86.0 5e-12 seq59 86.0 5e-12 seq24 86.0 5e-12 seq2 86.0 5e-12 >seq145 Length=315748 Score = 116 bits (128), Expect = 3e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| ||| | || | ||| || || |||||| || |||||||| || ||| Sbjct 114072 CCGCCGCGCAGCCTCAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCC 114013 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| ||||||||||| || | || | ||||||||| ||| | Sbjct 114012 AAG-GTC-CTGCCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAG 113955 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| ||| ||| ||| | | | ||||| || | |||| Sbjct 113954 GAATCCCTTCTTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCA 113895 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || || || || |||||||| ||||||||||| ||||||||||| Sbjct 113894 CCTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCGT 113843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| ||| | || | ||| || || |||||| || |||||||| || || Sbjct 114300 CCGCCGCGCAGCCTCAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 114241 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| ||||||||||| || | || | ||||||||| ||| | Sbjct 114240 AAG-GTC-CTGCCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAG 114183 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| || ||| ||||| | || || || | |||| Sbjct 114182 GAATTCCTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCAATAGTGTCCGAGCTCTCCA 114123 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || |||||||| || ||||| || || |||||| Sbjct 114122 CCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATC 114073 >seq44 Length=1658729 Score = 116 bits (128), Expect = 3e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| ||| | || | ||| || || |||||| || |||||||| || || Sbjct 1444077 CCGCCGCGCAGCCTCAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 1444136 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| ||||||||||| || | || | ||||||||| ||| | Sbjct 1444137 AAG-GTC-CTGCCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAG 1444194 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||| ||| ||| | | | ||||| || | |||| Sbjct 1444195 GAATTCCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCA 1444254 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || || || || |||||||| ||||||||||| ||||||||||| Sbjct 1444255 CCTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCGT 1444306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || ||||| || | ||||| ||||||||||| || | Sbjct 1443884 CTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGTCCATCCTCGAGCTGCTTACCAGCGAA 1443943 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||| ||| || | | |||||||||| || ||| ||||| Sbjct 1443944 AATAAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGTCTTGACGTT 1444003 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | |||| ||| | || ||||| || |||||||| || ||||| Sbjct 1444004 GTCAATAGTGTCCGAGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTCAC 1444063 Query 48715 AAAAATCTGCATC 48727 || || |||||| Sbjct 1444064 GAAGATTTGCATC 1444076 >seq317 Length=11171 Score = 102 bits (112), Expect = 7e-17 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| || | || | ||| || || |||||| || |||||||| || ||| Sbjct 9822 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 9763 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| ||||||||||| | | || | ||||||||| ||| | Sbjct 9762 AAG-GTC-CTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAG 9705 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||| ||| ||| | | | ||||| || | |||| Sbjct 9704 GAATCCCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCA 9645 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || || || || || || || ||||||||||| ||||||||||| Sbjct 9644 CCTCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGT 9593 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| || | || | ||| || || |||||| || |||||||| || ||| Sbjct 1811 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 1752 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| ||||||||||| | | || | ||||||||| ||| | Sbjct 1751 AAG-GTC-CTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAG 1694 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||| ||| ||| | | ||||| || | |||| Sbjct 1693 GAATCCCTTCCTTGTCCTGAATCTTCGTCTTAACGTTGTCAATGGTGTCCGAGCTCTCCA 1634 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCG 48728 ||||| || || || || || || || ||||||||||| |||||||||| Sbjct 1633 CCTCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCG 1583 >seq147 Length=303747 Score = 102 bits (112), Expect = 7e-17 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| || | || | ||| || || |||||| || |||||||| || ||| Sbjct 247238 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 247179 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| ||||||||||| | | || | ||||||||| ||| | Sbjct 247178 AAG-GTC-CTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAG 247121 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||| ||| ||| | | | ||||| || | |||| Sbjct 247120 GAATCCCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCA 247061 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || || || || || || || ||||||||||| ||||||||||| Sbjct 247060 CCTCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGT 247009 >seq32 Length=1846953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||| || | ||| | ||||| |||||||| ||| | | Sbjct 247242 CTCCTTTTGGATGTTGTAATCCGCGAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAA 247183 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||| ||| || ||| ||| | | Sbjct 247182 GATCAATCGCTGCTGGTCCGGAGGAATTCCCTCCTTATCCTGGATCTTCGACTTAACATT 247123 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| ||| ||||| || || || || ||||||||||| ||||| Sbjct 247122 ATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCAC 247063 Query 48715 AAAAATCTGCATCGT 48729 ||| ||||||||||| Sbjct 247062 AAAGATCTGCATCGT 247048 >seq125 Length=444406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| || | || | ||| || || |||||| || |||||||| || ||| Sbjct 271055 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 270996 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| | ||||| |||||||| || || | || | |||||||| ||| || Sbjct 270995 AGCGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 270936 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || ||| ||| | | | ||||| || | |||| | Sbjct 270935 ATTCCCTCCTTGTCCTGGATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACC 270876 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 |||| || || || || || || || ||||||||||| ||||||||||| Sbjct 270875 TCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGT 270826 >seq59 Length=1263218 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | ||| | ||||| |||||||| ||| | | Sbjct 503383 CTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAA 503442 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||| ||| || ||| ||| | | Sbjct 503443 GATCAATCGCTGCTGGTCCGGAGGAATTCCCTCCTTATCCTGGATCTTCGACTTAACATT 503502 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| ||| ||||| || || || || ||||||||||| ||||| Sbjct 503503 ATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCAC 503562 Query 48715 AAAAATCTGCATCGT 48729 ||| ||||||||||| Sbjct 503563 AAAGATCTGCATCGT 503577 >seq24 Length=2034879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | ||| | ||||| |||||||| ||| | | Sbjct 498427 CTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAA 498368 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||| ||| || ||| ||| | | Sbjct 498367 GATCAATCGCTGCTGGTCCGGAGGAATTCCCTCCTTATCCTGGATCTTCGACTTAACATT 498308 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| ||| ||||| || || || || ||||||||||| ||||| Sbjct 498307 ATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCAC 498248 Query 48715 AAAAATCTGCATCGT 48729 ||| ||||||||||| Sbjct 498247 AAAGATCTGCATCGT 498233 >seq2 Length=6181961 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| || |||||||| || ||||| || | ||||| Sbjct 4454667 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTGCGTCCATCCTC 4454608 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| | | || ||||||||||| ||| || | || ||||||||| Sbjct 4454607 CAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTG 4454548 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | |||| ||| | || ||||| Sbjct 4454547 GATCTTAGTCTTGACGTTGTCG--ATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTC 4454490 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||| || || || ||||||||| Sbjct 4454489 TTGCCAGTCAGAGTCTTGACGAAGATCTGCATC 4454457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247308428758