Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33 140 5e-29 seq46 118 2e-22 seq30 107 3e-19 seq7 107 3e-19 >seq33 Length=1840579 Score = 140 bits (154), Expect = 5e-29 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 1627367 CGCCAAGCGCCACCGCAAGCATCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 1627308 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || ||||| || || || |||| || |||| Sbjct 1627307 CCGGCGTCTGGCTCGCCGTGGCGGCGTGAAGCGAATCAGCGGGCTGATCTACGAGGAGAC 1627248 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||||||||||| ||| ||| ||| ||||| || ||| || || Sbjct 1627247 CCGTGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCAGGGATGCGGTCACCTACACGGA 1627188 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || ||||| ||||| ||||||| ||||||| || Sbjct 1627187 GCACGCTCGGCGCAAGACGGTCACTGCCATGGACGTCGTCTACGC 1627143 >seq46 Length=1506775 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 1205798 CGCCAAGCGCCACCGCAAGCATCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 1205739 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| ||||| || || ||||| || || || |||| || |||| Sbjct 1205738 TCGGCGCCTGGCTCGCCGTGGCGGCGTGAAGCGAATCAGCGGGCTGATCTACGAGGAGAC 1205679 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| || || ||||| || ||| || || Sbjct 1205678 CCGGGGCGTGCTCAAGATCTTCCTGGAGAATGTCATTAGGGATGCGGTCACCTACACGGA 1205619 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| ||||||| ||| | || | ||||| Sbjct 1205618 GCACGCCCGGCGCAAGACGGTCACGGCCATGGACGTCGTCTACGCACTCAAGAGGCAAGG 1205559 >seq30 Length=1886115 Score = 107 bits (118), Expect = 3e-19 Identities = 182/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||||||||| || ||| Sbjct 318528 GCCAAGCGCCACCGCAAGCATCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCAATC 318587 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| | || || || |||||| || || | |||| || || | Sbjct 318588 CGGCGCCTGGCTCGCAGGGGCGGCGTGAAGCGTATCAGCGGTCTCATCTACGAGGAAACC 318647 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCGA 16611 | | ||| | ||||||||||| ||| || ||| || | | || || || ||||| Sbjct 318648 AGGGGGGTTCTCAAGATCTTCCTGGAGAATGTGATCAGGGACGCCGTTACA-TACACCGA 318706 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| |||||||| | || || || | ||||| || || Sbjct 318707 GCACGCGCGGCGCAAGACGGTCACCGCCATGGATGTGGTGTACGCGCTCAAACGGCAGGG 318766 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 | | | | || || ||||| Sbjct 318767 AAGGACGCTCTACGGATTTGG 318787 >seq7 Length=3967200 Score = 107 bits (118), Expect = 3e-19 Identities = 182/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||||||||| || ||| Sbjct 9285 GCCAAGCGCCACCGCAAGCATCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCAATC 9226 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||||| | || || || |||||| || || | |||| || || | Sbjct 9225 CGGCGCCTGGCTCGTAGGGGCGGCGTGAAGCGTATCAGCGGTCTCATCTACGAGGAAACC 9166 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 | | ||| | ||||||||||| ||| || ||| || || || || || ||||| Sbjct 9165 AGGGGAGTTCTCAAGATCTTCCTGGAGAATGTGATCAGGGACGCCGTTACA-TACACCGA 9107 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| |||||||| | || || || | || || || || Sbjct 9106 GCACGCGCGGCGCAAGACGGTCACCGCCATGGATGTGGTGTACGCGCTCAAGCGGCAGGG 9047 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 | | | | || || ||||| Sbjct 9046 AAGGACGCTCTACGGATTTGG 9026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074506955294