Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq758 641 5e-179 >seq758 Length=186484 Score = 641 bits (710), Expect = 5e-179 Identities = 717/957 (75%), Gaps = 6/957 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||||| ||| | ||||||||||| || ||||| || | || ||||| || ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC---TTTATTGTTGCTTTCATCGCTGCA 135490 ||||| || || || | | |||| | || | || ||| |||||| ||||| || Sbjct 93169 ATGATCCCGACCCTGTT---AACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCT 93225 Query 135491 CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAAT 135550 || || || ||||||||||| || ||||| || ||| |||||||||| || ||||| || Sbjct 93226 CCGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAAC 93285 Query 135551 AACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || |||||||||||| ||||||| | | ||| ||||| | |||||||| ||| Sbjct 93286 AATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCC 93345 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || |||||||| || ||| ||||||| |||||||| || || ||||| || ||||| | Sbjct 93346 ATTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATC 93405 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | |||||||| | || || | ||||||||||| ||||||||||| | | Sbjct 93406 GTTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTC 93465 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||||||||||| ||| || ||||||||||||||||| || || || Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 || ||||| || ||||||| |||| ||||| ||| || |||||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| || || |||| ||| | || ||||| || ||||||||||| || |||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || |||||||||||||| || ||||| || ||||| || ||||| ||| |||||||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || || | || || ||||| || | || || || |||||| |||||| ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| ||| ||||| ||||| || || || |||||||| |||||||| ||||||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 ||||| |||||||||||||||| || || ||||| ||||| |||||||||||| | Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTG 93885 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 ||||||||||| || || |||||||||||| | || ||||| || || ||||| ||| Sbjct 93886 GCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTC 93945 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||||| || || |||||||| ||||| ||| | || | | || ||||| | ||| Sbjct 93946 AACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAAC 94005 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| || | | || || || || ||||||||||| ||||| || ||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGT 94062 Score = 387 bits (428), Expect = 2e-102 Identities = 690/997 (69%), Gaps = 14/997 (1%) Strand=Plus/Plus Query 137893 GAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTGG 137952 |||| || |||| ||| |||||| ||||||| ||| ||| |||| ||| ||||| Sbjct 33924 GAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCT 33983 Query 137953 CCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGG 138012 | | || || ||| | || || ||||| | ||| || ||||||| ||||| |||| Sbjct 33984 CTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGG 34043 Query 138013 CGTCTAGTT---ATCTTGAAGG-CGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCT 138068 | ||||| ||| || || ||| | | || | || | |||| || || || || Sbjct 34044 C---TAGTTCCTATCCGGAGGGTCGCAACTCTCTT-ACCGTCGCTGCATCCACCCCCGCC 34099 Query 138069 GATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTC 138128 | | ||||| | | | ||||||||||| ||| | ||||||||| || | Sbjct 34100 AACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACC 34159 Query 138129 CGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTG 138188 || |||| |||| | || || || ||||| || || || ||||| || || ||| || || Sbjct 34160 CGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTG 34219 Query 138189 ATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCATC-CGTCCCTACA 138246 || || ||| | ||||| | || || |||| |||| | ||| ||||| || | Sbjct 34220 ATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT--GCAATCGCGTCCGTATA 34277 Query 138247 ACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTT 138306 |||||||||| || || | ||||||||| || | || ||| | | |||| |||| | Sbjct 34278 ACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGT 34337 Query 138307 TGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCC 138366 |||| || ||| || |||| | || ||| || ||||| ||||| |||||||||| | Sbjct 34338 TGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCA 34397 Query 138367 TGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAG 138426 | | ||| ||||||| ||||||| |||||||||||||| |||||||||||||| || | Sbjct 34398 TCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTG 34457 Query 138427 CAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTT 138486 | || | | |||| ||||| | |||||| ||| || || || || || ||||| Sbjct 34458 CTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACAC 34517 Query 138487 TGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAG 138546 ||| || ||||| || | ||||| || || | | || || ||| |||| Sbjct 34518 TGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAG 34577 Query 138547 AAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTA 138606 | || ||||| |||||||||||||| || | ||||| |||| | || |||| Sbjct 34578 AGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCC 34637 Query 138607 GTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA-TGGGTCTCTGGACT 138665 || || ||| || |||||| ||| | || || ||||||| ||| || | ||| Sbjct 34638 CCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCAC-GGATG 34696 Query 138666 AGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAA 138725 ||| |||||| | ||||||| || | || || || |||||||| ||||| || || Sbjct 34697 AGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAG 34756 Query 138726 GAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTG 138785 || | || |||||||||||||| || ||||| || ||||| ||||| ||||| | Sbjct 34757 GAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCG 34816 Query 138786 AATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTT 138845 ||||| ||| | ||||| |||||||| || |||||| ||||| |||||| | || || Sbjct 34817 AATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTC 34876 Query 138846 CCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 138882 || || || || | || | || |||||||| |||| Sbjct 34877 CCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627962050003200