Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq758 536 3e-148 >seq758 Length=186484 Score = 536 bits (594), Expect = 3e-148 Identities = 723/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || || || ||| |||| || ||||| || |||||||| | || ||||| || ||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTAT-ACTCGCCTTTATCGCAGCACC 19408 ||||| || | | || |||| || | || || ||| || ||||||||||| || Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACT-GCTTTTATCGCAGCTCC 93227 Query 19409 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 19468 ||| |||||||| || || || || ||||| ||||| || || | || ||||| ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 19469 TATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGAT 19528 ||| || ||||| || | | || | |||| || || || ||||||| || || || Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 19529 CTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTG 19587 ||||||| ||||| || | ||||| ||| |||||||||||||||| || |||| | | Sbjct 93348 TTGGGAAG-CGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCG 93406 Query 19588 TCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAAC-TATCTTAC 19646 | | |||||| | | |||||||| ||| ||| | ||||||||| || ||| | Sbjct 93407 TTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTT-C 93465 Query 19647 AGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTT 19706 | || || ||| | || ||||| || || || |||| || | |||| || Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 19707 GCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGT 19766 || || ||| | | ||||| |||| ||||| || || || ||||||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||| || || ||||||||| |||| |||||||| |||||||| |||||||||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 |||||||||||| | ||||| |||||||||||||| |||||||| ||| ||||||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || ||||| ||||| | ||| |||||| |||||| ||| ||| ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || | ||| || || || || || |||||||| ||||| ||||| ||||| ||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||||||| || ||||||||| || ||||| || ||||| |||| || |||||| Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTT-TTTCTT 93884 Query 20067 -GCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTT 20125 ||| ||| || || || || || ||| ||||| | |||| || |||| |||||||| Sbjct 93885 GGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTT 93944 Query 20126 CAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCC 20185 |||||| || ||||| ||||||||||| || ||||||||| | | ||| | || Sbjct 93945 CAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAA 94004 Query 20186 AACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAA 20245 |||||||| || | | || | || ||||| || | || |||||||| || || || Sbjct 94005 CACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAA 94064 Query 20246 TGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||| |||||||| || ||| | ||||| | ||| Sbjct 94065 CGCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440299845048