Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq758 513 2e-140 >seq758 Length=186484 Score = 513 bits (568), Expect = 2e-140 Identities = 683/942 (73%), Gaps = 10/942 (1%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| ||||| ||||| || |||||||| || || ||||||| | || || Sbjct 93149 TTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTA 93208 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 || || |||||||| || || || ||||| ||||| || || || || || |||||| Sbjct 93209 CTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTT 93268 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | || || || ||||| || ||||||||||| || | || | || ||| |||| Sbjct 93269 CTCTTATATACGGGAACAATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCG 93328 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| |||||||| || || |||||||| ||| || ||||||| ||||| ||||| || | Sbjct 93329 GTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCG 93388 Query 211850 GTCCTTACCAGTTGGTAATC-TTC--CACTTCCTTATCGGAATCTCAGCATACATGGGAA 211906 |||| ||| | ||||| ||| |||||||| | ||| | | |||||||| Sbjct 93389 GTCCCTACGA---ACTAATCGTTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTC 93445 Query 211907 GACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAG 211966 | ||||||||||| | ||| || |||||||| ||||||||| |||||| || |||| Sbjct 93446 GTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAG 93505 Query 211967 CACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCT 212026 | ||||| |||| || ||| || || | | ||||| | ||||| || |||| Sbjct 93506 CCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCT 93565 Query 212027 CAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 212086 | ||||||||||||||||| || || || || |||||||| ||| |||| |||||||| | Sbjct 93566 CCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTG 93625 Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAG 212146 |||| |||||||||||||| || ||||| ||| ||||| || || | ||||| ||| Sbjct 93626 AACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGAT 93685 Query 212147 CATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTG 212206 | ||||| ||||||||| ||||| | || || ||| || ||||| |||||||||| Sbjct 93686 CTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTG 93745 Query 212207 GTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCG 212266 || || ||| ||||||| ||| || || ||||| || ||||||||||| | Sbjct 93746 AGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTG 93805 Query 212267 TTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCA 212326 | ||||| || || ||||||||| || | |||||||| ||||| || || ||| | Sbjct 93806 TAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCC 93865 Query 212327 GAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGG 212386 | ||||||| ||| | || | ||||| || | || | ||||| ||| || ||| Sbjct 93866 GTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGG 93925 Query 212387 GTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT- 212445 | || |||||||||| ||||||||||| || |||||||| |||||||| || |||||| Sbjct 93926 GCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATA 93985 Query 212446 GCATCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTAT 212504 || |||| | | || | || |||| || || | ||| | || ||||||||||| Sbjct 93986 GC--CAGGGACGTGTCATAAACACATGGGCCGACATTATCAACCGCGCCAACCTTGGTAT 94043 Query 212505 GGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGA 212546 ||| |||||||| ||| | || || ||||||||||| || || Sbjct 94044 GGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 94085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807547548414480