Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq758 527 7e-145 >seq758 Length=186484 Score = 527 bits (584), Expect = 7e-145 Identities = 700/972 (72%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 ||| || |||||| | ||| |||| ||||| ||||| | |||||||| || |||| Sbjct 93129 CACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAAC 93188 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 ||| | | |||||| || || ||||| ||||| ||||| ||||| ||||| || Sbjct 93189 TGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTAT 93248 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | || || ||| | |||||| | |||| || ||||| || |||||||||||| | | Sbjct 93249 TCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTAT 93308 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 || | || ||| || || || |||||||| ||||| |||||||| || |||| || Sbjct 93309 CCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGA 93368 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 170985 || ||| | |||||||| ||||| ||| | || | || | |||||||| ||||| | Sbjct 93369 TGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGT 93428 Query 170986 CTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGAT 171045 || |||||||||| | |||||||||| | | | | || ||| | |||||||| Sbjct 93429 AGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGAT 93488 Query 171046 ATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATT 171105 ||| || |||||||| ||||| | || || || || || | | || || | Sbjct 93489 CGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTAT 93548 Query 171106 CGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCAT 171165 ||||| || ||||| || |||||||| |||| ||||| || || |||||||| || Sbjct 93549 TGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTAT 93608 Query 171166 GTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 171225 | ||||||||||||| ||||||||||| || ||||| || ||||| ||| ||||| || Sbjct 93609 GATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGGC 93668 Query 171226 AGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCT 171285 || | ||||| || ||| |||||||| ||||| ||||| | || || ||| || Sbjct 93669 TGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCCT 93728 Query 171286 AATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGA 171345 ||| | || || |||||||| || ||| || || | ||| || || ||||| Sbjct 93729 GATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAGA 93788 Query 171346 AGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGC 171405 ||||||||||||||||| |||||||| || ||||||||| |||| |||||||| ||||| Sbjct 93789 GGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATGC 93848 Query 171406 ATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGT 171465 || || ||||| ||||| ||||||| ||| | |||| | || ||||| || | Sbjct 93849 TAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTAT 93908 Query 171466 ATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAA 171525 ||||| ||| || |||| || | |||||||| |||||||| ||||| |||||||| || Sbjct 93909 CTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTAA 93968 Query 171526 CCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAG 171585 |||||| || || ||| | ||| | || ||||||| || || | ||| | Sbjct 93969 CCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACATGGGCCGACATTATCAACCG 94028 Query 171586 AGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCT 171645 || |||||||| ||||| |||||||||||| | || || ||||||||||| ||||| || Sbjct 94029 CGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGATCT 94088 Query 171646 AGCATCTGCTGA 171657 || || | ||| Sbjct 94089 GGCTTCCGTTGA 94100 Score = 172 bits (190), Expect = 6e-38 Identities = 655/1026 (64%), Gaps = 29/1026 (3%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| || || |||||| ||||| | |||| | || |||||||||| | ||| | Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 ||| |||| || | | ||| ||||||||| || || |||| || |||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 ||||| || || | || || |||| ||||| |||| | | || | || | | Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 || || || | | | ||| | ||| || ||||| || ||||| ||| Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 |||||| | || |||| ||||||||||| ||||||| ||| || || | ||||| Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 172166 | ||||| | || ||| ||| | | || | || | || || ||| | || Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATC 34266 Query 172167 -CGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCA---CGAGCATCTT 172222 ||||| || |||||| | || || || || || || || ||| | | ||| | Sbjct 34267 GCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGT-TTCTGTTCCCGTATCCT 34325 Query 172223 TCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGC 172282 | || |||| || || ||| || |||| | |||||| | ||||| ||||| Sbjct 34326 TG--ATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGC 34383 Query 172283 AATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 172342 ||||| || | || | || |||||| |||| ||| || || || || ||||| Sbjct 34384 CATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCA 34443 Query 172343 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 172402 ||||||||| || || || ||| |||| || | | |||| | || || ||||| Sbjct 34444 TATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAAC 34503 Query 172403 AGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTAC 172462 || |||| ||| ||| || || ||| || || | Sbjct 34504 CGTGGAGAATACACTGTTCGAGGATGG------------TGATGGCGCGAAT-------- 34543 Query 172463 AACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAA 172522 || ||| | || | | |||| || || ||||| |||||| ||| |||||||||| Sbjct 34544 -ACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAA 34602 Query 172523 CAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCT 172582 | || ||||| || | || ||| | || | |||||| | | |||||||| Sbjct 34603 TCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCC 34662 Query 172583 TATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGC 172642 ||||| |||||||| |||| ||| ||| |||| || | || ||||| || Sbjct 34663 CATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGC 34722 Query 172643 ACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGA 172702 | || || | || || ||||| || || || ||| | | ||||||||||| || || Sbjct 34723 CCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGA 34782 Query 172703 GTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTC 172762 ||| ||||| ||||| ||||| ||||| ||||| ||||| | || |||||| | Sbjct 34783 GTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGC 34842 Query 172763 ATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAA 172822 | || ||||| || ||||| ||| | || ||||| || || || | || || || || Sbjct 34843 AGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAA 34902 Query 172823 CGCACT 172828 ||| || Sbjct 34903 CGCTCT 34908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263396703120