Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq39 86.0 8e-12 seq64 82.4 1e-10 >seq39 Length=1751465 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 62889 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62948 || |||| ||||| || ||||| |||||| |||| | | | ||||| | ||| Sbjct 1281654 AACGCAATGGATGCAAGGTTACACACGGCTGTCTCAGAGGGACTGGTATATTCCACAATC 1281595 Query 62949 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008 |||||||| ||||| ||||||||||| || | |||||||||||| ||||| ||||| Sbjct 1281594 TCAGTGCAGAGATTTGAGCACTTGATAGTCCCCAGATTTTGTTGATTGCTCTTCCTGTTA 1281535 Query 63009 CACGCATCCT 63018 || | ||||| Sbjct 1281534 CAAGTATCCT 1281525 >seq64 Length=1151164 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 62889 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62948 || |||| ||||| || ||||| |||||| |||| | | | ||||| | ||| Sbjct 1111236 AACGCAATGGATGCAAGGTTACACACGGCTGTCTCAGAGGGACTGGTATATTCCACAATC 1111177 Query 62949 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008 |||||||| ||||| ||||||||||| || | |||||||||||| ||||| |||| Sbjct 1111176 TCAGTGCAGAGATTTGAGCACTTGATAGTCCCCAGATTTTGTTGATTGCTCTTCCTGTTG 1111117 Query 63009 CACGCATCCT 63018 || | ||||| Sbjct 1111116 CAAGTATCCT 1111107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941297575280