Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq758 654 0.0 >seq758 Length=186484 Score = 654 bits (724), Expect = 0.0 Identities = 745/995 (75%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||||| ||| | ||| ||| | || || ||||| |||| ||||| || ||| Sbjct 93108 CTTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACT 93167 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || ||||| | |||||| || || ||||| ||||| | || || | Sbjct 93168 GATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTC 93226 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 | || || ||||| || || || || |||||||| | || ||||| || || || |||| Sbjct 93227 CGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACA 93286 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || |||||||||||| || ||||| ||||| ||| || ||| | |||||||| |||| Sbjct 93287 ATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCA 93346 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| ||||| ||||||||||||| || ||||| ||||| | | | || | | Sbjct 93347 TTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCG 93406 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAA-TTGTCTTAC 166410 | | |||||||| | || | | ||||||||||||||| |||||| || ||| | Sbjct 93407 TTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTT-C 93465 Query 166411 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 166470 ||| | |||||||| |||||||| || || ||||| || ||||||||||| || || Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 166471 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGT 166530 || || || || |||| ||| | |||||||| ||||| |||| ||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 166531 ATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCAC 166590 ||| |||||||||||||| ||| | || |||||||| || ||||||||||| ||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 166591 CCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCAC 166650 || ||||| ||| ||||||| || || |||||||| || || || ||| || ||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 166651 GGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTAT 166710 || | || ||||| || |||| || |||||||| | ||| || ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770 ||||||| ||||||||| ||||| || || || ||||| || |||||||| ||||||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 166771 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTC 166830 ||||| ||||||||||||| ||| ||| || ||||| || || || ||||| ||| | Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTG 93885 Query 166831 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTC 166890 || || ||||| || || |||||||||||||| ||| | || | ||||| ||||| ||| Sbjct 93886 GCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTC 93945 Query 166891 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 166950 ||||| |||||||||||||| ||||| ||| | | ||| | ||||| ||||| | ||| Sbjct 93946 AACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAAC 94005 Query 166951 ACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAAT 167010 || ||||| || | ||||||| || || |||||||| || ||||| || ||||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAAC 94065 Query 167011 GCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||||||||||||| ||||| ||| | | ||| Sbjct 94066 GCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 291 bits (322), Expect = 9e-74 Identities = 539/788 (68%), Gaps = 2/788 (0%) Strand=Plus/Plus Query 167531 CTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGG 167590 ||||||||||| ||| | || || ||||||| | | |||||||| | || || || ||| Sbjct 34127 CTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGG 34186 Query 167591 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAG 167650 | || || || ||||| || || |||| | | || || |||| | || |||| || Sbjct 34187 ACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAA 34246 Query 167651 ATAAGTAGACTAGTAGGTATC-CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGC 167709 | | || || | ||| ||||| || || || || || ||||| | ||| || || Sbjct 34247 CTCGCTCGATCTGT-GCAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGC 34305 Query 167710 TGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACC 167769 || | ||| | || | | ||| |||| | || |||||| || |||| | ||||| Sbjct 34306 CGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACC 34365 Query 167770 GTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTG 167829 | ||||| ||||| || || ||| | | || ||| |||||| ||||||| || Sbjct 34366 CAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTG 34425 Query 167830 GACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTC 167889 ||| |||||||| || |||||||||||||||||||| | | || | ||| | Sbjct 34426 GACCCTCAACCCGTTTCATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACG 34485 Query 167890 TGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACAC 167949 ||| | || || | || || |||||||| |||| || |||||||| || || || Sbjct 34486 TGCTACTCACGGCGCAACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATAC 34545 Query 167950 TTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCG 168009 ||| || | || |||| || || || |||||||||||||| |||||||| || Sbjct 34546 ATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCG 34605 Query 168010 ATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTAT 168069 || ||||| |||| | ||| |||| | ||| || ||| ||| |||||| || Sbjct 34606 CTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCAT 34665 Query 168070 GCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACT 168129 | | ||||| || |||| || ||| ||| ||||||| | | ||||| || | Sbjct 34666 GTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCC 34725 Query 168130 TAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTT 168189 ||||| || || |||||||| || || ||||| || | |||||||| ||||| ||||| Sbjct 34726 GAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTT 34785 Query 168190 TGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCC 168249 |||||| || || || || || || ||||| || | ||||| |||||||| | Sbjct 34786 CGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGC 34845 Query 168250 AGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGC 168309 || || || ||||||||| | |||||||| || || || | || | || ||||| Sbjct 34846 TCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGC 34905 Query 168310 TCTGTGAT 168317 ||| |||| Sbjct 34906 TCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567226625476800