Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq32 105 7e-18 seq22 104 3e-17 seq110 100 3e-16 seq60 100 3e-16 seq125 82.4 9e-11 seq64 82.4 9e-11 seq7 82.4 9e-11 >seq32 Length=1846953 Score = 105 bits (116), Expect = 7e-18 Identities = 89/108 (82%), Gaps = 5/108 (5%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 742539 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTACCGAGGG 742480 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA---ATTATTATTGGAATTTTT 126366 |||||||||||||||||| ||||||| ||| |||| ||||||| Sbjct 742479 CGTGGGTTCGAACCCCACTTCTGACAAAGCATTTTTATATAAATTTTT 742432 >seq22 Length=2100764 Score = 104 bits (114), Expect = 3e-17 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 1008011 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTACCGAGGG 1008070 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||||||| ||| || Sbjct 1008071 CGTGGGTTCGAACCCCACTTCTGACAAAGCATTTTT 1008106 >seq110 Length=565628 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 374259 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 374318 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||| ||||||||| Sbjct 374319 TGGGTTCGAACCCCACTTCTGACAAAT 374345 >seq60 Length=1266795 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 340954 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 340895 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||| ||||||||| Sbjct 340894 TGGGTTCGAACCCCACTTCTGACAAAT 340868 >seq125 Length=444406 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCT-CGGGAGCG 126323 |||||| |||||||| |||||||||||||||| | ||| |||||| ||| | ||| ||| Sbjct 293692 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCGTGAGGGGGCG 293633 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 293632 TGGGTTCAAATCCCACTTCTGACA 293609 >seq64 Length=1151164 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT-- 126315 ||| || |||||| |||||||| ||||||||||| |||| | ||| |||| | | || Sbjct 891989 TATGTAATGTCAGGATGGCCGAGCGGTCTAAGGCGGCAGACTCAAGTTCTGCTCCTCTAG 891930 Query 126316 CGGGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 || | |||||||||| || ||||| ||||||||| Sbjct 891929 CGAGGGCGTGGGTTCAAATCCCACTCCTGACAAA 891896 >seq7 Length=3967200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--GCG 126323 |||||| |||||||||||||||||||| |||| | ||| |||| | | |||| || ||| Sbjct 1272278 GTCAGGATGGCCGAGTGGTCTAAGGCGGCAGACTCAAGTTCTGCTCCTCTCGCGAGGGCG 1272219 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1272218 TGGGTTCAAATCCCACTTCTGACA 1272195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855523743920