Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq68 87.8 4e-12 seq43 87.8 4e-12 seq18 87.8 4e-12 seq4 87.8 4e-12 seq10 86.0 1e-11 seq9 86.0 1e-11 seq5 86.0 1e-11 seq1 86.0 1e-11 seq24 84.2 4e-11 seq12 84.2 4e-11 >seq68 Length=1081329 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 725143 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 725086 >seq43 Length=1658784 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 461531 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 461474 >seq18 Length=2450372 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 2014245 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 2014188 >seq4 Length=4340499 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 3450171 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 3450114 >seq10 Length=3149477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2300280 AGCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2300221 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| | ||| ||| Sbjct 2300220 CCCCACGGCCGGCGGAA 2300204 >seq9 Length=3666672 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1098906 AGCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1098965 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| ||||||| Sbjct 1098966 CCCCACGGTCGGCAGAA 1098982 >seq5 Length=4143896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 197906 AGCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 197965 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| | ||| ||| Sbjct 197966 CCCCACGGCCGGCGGAA 197982 >seq1 Length=6951972 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4346682 AGCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4346623 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| ||||||| Sbjct 4346622 CCCCACGGTCGGCAGAA 4346606 >seq24 Length=2034879 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1767021 AGCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1767080 Query 142563 CCCCAC 142568 |||||| Sbjct 1767081 CCCCAC 1767086 >seq12 Length=2904818 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1968454 AGCCGGCCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1968395 Query 142563 CCCCAC 142568 |||||| Sbjct 1968394 CCCCAC 1968389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826817777478