Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq59 91.5 1e-13 seq24 91.5 1e-13 seq32 86.0 5e-12 >seq59 Length=1263218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || |||||||||||||| | || ||||||||| ||||||||||| || Sbjct 503347 ACCTCCTCGAAGGCGCAGCACCAGATGCAAGGTCGACTCCTTCTGGATGTTGTAATCCGC 503406 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || || | |||||||||||||| |||| |||||||| ||| || Sbjct 503407 GAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGG 503466 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | ||| || ||| || || ||||| | | | || | || | ||| Sbjct 503467 AATTCCCTCCTTATCCTGGATCTTCGACTTAACATTATCGATCGTGTC-GGAGCTCTCGA 503525 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || || || ||||| || || ||||||||||| ||||| Sbjct 503526 CCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 503574 >seq24 Length=2034879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || |||||||||||||| | || ||||||||| ||||||||||| || Sbjct 498463 ACCTCCTCGAAGGCGCAGCACCAGATGCAAGGTCGACTCCTTCTGGATGTTGTAATCCGC 498404 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || || | |||||||||||||| |||| |||||||| ||| || Sbjct 498403 GAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGG 498344 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | ||| || ||| || || ||||| | | | || | || | ||| Sbjct 498343 AATTCCCTCCTTATCCTGGATCTTCGACTTAACATTATCGATCGTGTC-GGAGCTCTCGA 498285 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || || || ||||| || || ||||||||||| ||||| Sbjct 498284 CCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 498236 >seq32 Length=1846953 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || |||||||||||||| | || |||||| || ||||||||||| || Sbjct 247278 ACCTCCTCGAAGGCGCAGCACCAGATGCAAGGTCGACTCCTTTTGGATGTTGTAATCCGC 247219 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || || | |||||||||||||| |||| |||||||| ||| || Sbjct 247218 GAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGG 247159 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | ||| || ||| || || ||||| | | | || | || | ||| Sbjct 247158 AATTCCCTCCTTATCCTGGATCTTCGACTTAACATTATCGATCGTGTC-GGAGCTCTCGA 247100 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || || || ||||| || || ||||||||||| ||||| Sbjct 247099 CCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 247051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058731887916