Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq59 95.1 9e-15 seq32 95.1 9e-15 seq24 95.1 9e-15 seq44 89.7 4e-13 >seq59 Length=1263218 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | ||||| | ||||| ||||| || ||||| |||||||| || Sbjct 502662 TGCCACCACGGAGACGCAAAACCAGGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCCG 502721 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || ||||| ||| | ||||| ||||| ||||| | Sbjct 502722 CAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGG 502781 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| | || || | || || || || | || | Sbjct 502782 GGATGCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCGATCGTGTCCGAGCTCTCCA 502841 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || || ||||| || || || || |||||||||||| Sbjct 502842 CCTCCAAGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATTTGCATA 502891 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || || || |||||||| ||| ||| | | | |||||| Sbjct 503138 ACCAAATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 503197 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||||||||| ||||| ||||| ||||||||||| Sbjct 503198 AGCTGCTTGCCCGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 503257 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || || ||| | || || || | ||||| || || Sbjct 503258 ATCTTGGTCTTCACGTTGTCAATTGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTTC 503317 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || ||||||||| Sbjct 503318 CCCGTTAGGGTCTTGACGAAGATTTGCATA 503347 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || || || ||||||||||| ||| | | | || || Sbjct 502453 AACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCTC 502512 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||||||| | || | | ||| ||||| |||||| || |||||||| Sbjct 502513 GAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTG 502572 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | || || | || || || ||| | ||||| || ||||| || || || Sbjct 502573 GATCTTGGTCTTAACGTTGTCAATCGTGTCGGAGCTCTCTACCTCCAAGGTGATCGTCTT 502632 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||||||| Sbjct 502633 GCCAGTGAGAGTCTTCACGAAGATTTGCAT 502662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || || || |||||||| ||| ||| | | | |||||| Sbjct 502910 ACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 502969 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||||||||| ||||| ||||| ||||||||||| Sbjct 502970 AGCTGCTTGCCCGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 503029 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || || ||| | || || || | || || || || Sbjct 503030 ATCTTGGTCTTCACGTTGTCAATTGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTTC 503089 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || ||||||||| Sbjct 503090 CCCGTCAAGGTCTTGACGAAGATTTGCATA 503119 >seq32 Length=1846953 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | ||||| | ||||| ||||| || ||||| |||||||| || Sbjct 247963 TGCCACCACGGAGACGCAAAACCAGGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCCG 247904 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || ||||| ||| | ||||| ||||| ||||| | Sbjct 247903 CAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGG 247844 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| | || || | || || || || | || | Sbjct 247843 GGATGCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCGATCGTGTCCGAGCTCTCCA 247784 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || || ||||| || || || || |||||||||||| Sbjct 247783 CCTCCAAGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATTTGCATA 247734 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || ||||| |||||||| ||| ||| | | | |||||| Sbjct 247487 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 247428 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||| ||||| ||||| || || ||||||||||| Sbjct 247427 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 247368 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || || ||| | || || || | ||||| || || Sbjct 247367 ATCTTGGTCTTAACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTTC 247308 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || |||||||||||| Sbjct 247307 CCCGTTAGGGTCTTGACGAAAATTTGCATA 247278 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || || || ||||||||||| ||| | | | || || Sbjct 248172 AACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCTC 248113 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||||||| | || | | ||| ||||| |||||| || |||||||| Sbjct 248112 GAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTG 248053 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | || || | || || || ||| | ||||| || ||||| || || || Sbjct 248052 GATCTTGGTCTTAACGTTGTCAATCGTGTCGGAGCTCTCTACCTCCAAGGTGATCGTCTT 247993 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||||||| Sbjct 247992 GCCAGTGAGAGTCTTCACGAAGATTTGCAT 247963 >seq24 Length=2034879 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | ||||| | |||||| ||||| || || || |||||||| || Sbjct 499376 TGCCACCACGGAGACGCAAAACCAGATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCG 499317 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || ||||| ||| | ||||| ||||| ||||| | Sbjct 499316 CAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCCGGGG 499257 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| | || || | || || || || | || | Sbjct 499256 GGATGCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCGATCGTGTCCGAGCTCTCCA 499197 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || || ||||| || || || || |||||||||||| Sbjct 499196 CCTCCAAGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATTTGCATA 499147 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || ||||| |||||||| ||| ||| | | | |||||| Sbjct 498672 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGAGTCCGGCCATCTTCT 498613 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||| ||||| ||||| || || ||||||||||| Sbjct 498612 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 498553 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || || ||| | || || || | ||||| || || Sbjct 498552 ATCTTGGTCTTAACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTTC 498493 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || |||||||||||| Sbjct 498492 CCCGTTAGGGTCTTGACGAAAATTTGCATA 498463 >seq44 Length=1658729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || || |||| || | || | ||| ||||| || || || || |||||||| || ||| Sbjct 1444077 CCGCCGCGCAGCCTCAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 1444136 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | || |||| |||| || || |||||| | || | |||||| ||||| || Sbjct 1444137 AAGG-TCCTGCCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 1444195 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||||||| ||| || | || ||| | || || || || | || || Sbjct 1444196 AATTCCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCAC 1444255 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || || || || || || ||||| ||||| || ||||| Sbjct 1444256 CTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1444303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388698368030