Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq758 684 0.0 >seq758 Length=186484 Score = 684 bits (758), Expect = 0.0 Identities = 756/998 (76%), Gaps = 12/998 (1%) Strand=Plus/Minus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| | | ||| || || ||||||||||||||||| ||||| || ||||| || ||||| Sbjct 94100 TCAACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATA 94041 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| || ||||||| | ||| ||||| ||||| | |||||| || || | |||| Sbjct 94040 CCAAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCA 93981 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | ||| ||||| |||||||||||||| |||||||| ||||| ||||| | || | | Sbjct 93980 ACTACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAA 93921 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 || || |||||||| || || |||||||| || || | ||| ||||| || ||||||||| Sbjct 93920 GCGGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAG 93861 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 || || || ||| ||||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct 93860 TTATTAAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATG 93801 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 || || || || ||||| ||||| ||| | ||||| ||| ||| ||| ||||||| Sbjct 93800 TTATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTG 93741 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 ||||| || | ||| ||| ||||| | ||||||||||| |||||||| ||||| || Sbjct 93740 GTTTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCG 93681 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 || || || ||||| || |||| ||||||||| || ||||| ||||||||||| || ||| Sbjct 93680 CCGAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCT 93621 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| || | ||| ||||||| || |||||||| || | ||||||| |||| ||||| Sbjct 93620 TGGAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAG 93561 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 |||||||| | ||| |||| | || || || | || || ||||| || || ||| Sbjct 93560 CTTCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAG 93501 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 || || ||| |||||| || |||||||| | ||| | ||||||||||||||||||| Sbjct 93500 TACGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCC 93441 Query 8189 ATGTATGCATAGATAC--CGATCAGGAAGTGGAAGATAACGA---GTTGGAAAGGACCAC 8243 ||||| ||| || ||| | | ||||||||| |||| |||| ||| | | ||||| | Sbjct 93440 ATGTA-GCA-AGCTACTCCAAGCAGGAAGTG-AAGA--ACGATTAGTTCGTAGGGACCGC 93386 Query 8244 CGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAA 8303 ||||||| ||||| ||||||| ||| || |||||||| ||||| |||||||| | ||| | Sbjct 93385 CGTTGTATAGCCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGA 93326 Query 8304 TAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAAC 8363 ||||| || | || | || |||||||||||| || ||||| || || || || |||| Sbjct 93325 TAGCGGCGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAAC 93266 Query 8364 CAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGA 8423 ||| ||||| || || || |||||||| || || || ||||| |||| ||||| | Sbjct 93265 CAGAAACGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAA 93206 Query 8424 TGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACA 8482 |||| || | | |||| | ||| || || |||||||| ||||||||||| || | Sbjct 93205 TGAATACGGA-GGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATG 93147 Query 8483 TACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || || ||||| | |||| ||| | ||| | ||||| Sbjct 93146 TAAAGGCGATTTTCGGTGCTGGTGATCCAATCGCAGAA 93109 Score = 336 bits (372), Expect = 3e-87 Identities = 634/927 (68%), Gaps = 4/927 (0%) Strand=Plus/Minus Query 6258 ATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTT 6317 |||| |||||||| || | || | || || || || ||||| | ||||||||| || | Sbjct 34913 ATCAAAGAGCGTTTCCACGGGGTAGAACCTCCTCGGGGAATACGAGGTTTTCATGAGGCT 34854 Query 6318 GATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGA 6377 ||||| | ||||||||| ||||| | ||| |||||| | || || ||||| || || Sbjct 34853 GATCCTGAGCTGCCATCCAAGCACGAATACCCTCATTCGACAGAATATTCTTTGTGTAAG 34794 Query 6378 ACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC 6437 || |||||||| ||||| || ||||| | | ||| || || || |||||||| || | Sbjct 34793 GAGTTTCGAACTCGGGATCTTCTGCTGCGCGCACCTCCTGGGAGACGAAGTCATACGCCC 34734 Query 6438 TAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAA 6497 || || | || ||||||| | ||||| | ||| ||| | || || | Sbjct 34733 GCAGATTCGGGGCTAGACCAACTACTCCAATAGCACTCATCCGTGAACCAGTGACGGGTA 34674 Query 6498 CAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAG 6557 | || | ||| ||| ||| || ||| || ||| | ||| | ||| | | || | Sbjct 34673 CGAATAACATGGGGAAGTGTGACCGACGTTTGTTGGGGGGGGCAACACCGGATGTTTGGG 34614 Query 6558 ACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACG 6617 |||| || |||||||| || ||||| ||||| ||||| || ||| || || | | | Sbjct 34613 ACCAAAAGCGATTAGCAGTAACCATGGAATAAGTCTCTTCAGATTGGGTCGGATTGGAGG 34554 Query 6618 CCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGT 6677 | ||| ||||| | |||||||| || |||| |||||||| || || || |||| Sbjct 34553 CGCGGAATGTATTCGCGCCATCACCATCCTCGAACAGTGTATTCTCCACGGTTGCGCCGT 34494 Query 6678 GAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGT 6737 || |||||| | || |||| | || || || ||||||||||||||||||| Sbjct 34493 GAGTAGCACGTGGGGGAGCAGCACCCGGTACTCCAGCAACTCCCATCATATGAAACGGGT 34434 Query 6738 TGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACAC 6797 |||| ||||| || |||| ||||| ||| ||| | | | ||||| || ||||| |||| Sbjct 34433 TGAGGGTCCAATTATGGAGACCCTGAGGGAGGAGGATGGATCGGAAGATGGCTGCTACAC 34374 Query 6798 CAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACA 6857 | | || || | |||| || |||||| || | |||| || | | || | | Sbjct 34373 CGGAGCTGGGTGCGGAAAACCGACCGGACTGGCCCAACGGATGGATCAAGGATACGGGAA 34314 Query 6858 CAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACG-AATACCGACTAGA 6916 || | || || |||||| | |||||||||||||| || || ||||| || | || ||| Sbjct 34313 CAGAAACGGCGATGGGAGCGGAAAACGCGATTGCGTTATACGGACGCGATTGC-AC-AGA 34256 Query 6917 -CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 || |||| || | || || | ||| ||| || | |||| || || ||||| || Sbjct 34255 TCGAGCGAGTTCGGATTGGCGCAACATAGGACCCATCAAACCAAAAGCACCATGGAGGGC 34196 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 || || | |||||| || || | |||| ||| ||| ||||||||| || || || || Sbjct 34195 GACGAAGGTCCATAGACCACCTAATTGGCACCAACGGGTGAAATCTCCTTGCGCCTCGGG 34136 Query 7036 ACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 |||||| || | | |||||||| | | || || || || ||| |||| | || Sbjct 34135 ACCCCAAAGCAACGGCGGGGAATGTGCTGGGCTGTTGGCGGGGGTGGATGCAGCGACGGT 34076 Query 7096 AAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGAC 7155 ||| | || | ||||| |||| ||| ||| | ||||||||||||| ||||| Sbjct 34075 AAGAGAGTTGCGACCCTCCGGATAGGAACTAGCCAATCCGTGAGTGTACCGTGAGGTGAC 34016 Query 7156 GAAAGTTGTGCCCGTGAGCCAACCGCC 7182 ||||||| ||||||| ||||||||| Sbjct 34015 AGAAGTTGTACCCGTGAACCAACCGCC 33989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622118905367520