Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq145 96.9 2e-15 seq44 96.9 2e-15 seq59 93.3 3e-14 seq6 86.0 4e-12 seq2 86.0 4e-12 >seq145 Length=315748 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||| | || |||| || | || |||||| |||| Sbjct 114948 TCTTTCTGGATGTTATAATCTGCCAGAGTACGCCCATCCTCGAGCTGCTTCCCGGCAAAG 114889 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCG 39646 || | ||||||||| |||| || | |||||| ||||| || || | || | || | Sbjct 114888 ATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACATTG 114829 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||| | ||| ||||| |||| ||| || || || || || || || || | Sbjct 114828 TCGATC--GTGTCCGAGCTCTCCACCTCCAGAGTGATCGTCTTGCCTGTCAAGGTCTTGA 114771 Query 39707 CGAAGATCTGCATG 39720 |||||||||||||| Sbjct 114770 CGAAGATCTGCATG 114757 >seq44 Length=1658729 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||| | || |||| || | || |||||| |||| Sbjct 1443429 TCTTTCTGGATGTTATAATCTGCCAGAGTACGCCCATCCTCGAGCTGCTTCCCGGCAAAT 1443488 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCG 39646 || | ||||||||| |||| || | |||||| ||||| || || | || | || | Sbjct 1443489 ATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACATTG 1443548 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||| | ||| ||||| |||| ||| || || || || || || || || | Sbjct 1443549 TCGATC--GTGTCCGAGCTCTCCACCTCCAGAGTGATCGTCTTGCCTGTCAAGGTCTTAA 1443606 Query 39707 CGAAGATCTGCATG 39720 |||||||||||||| Sbjct 1443607 CGAAGATCTGCATG 1443620 >seq59 Length=1263218 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| || || || || || |||||| Sbjct 503120 CCCCCGCGAAGACGAAGGACCAAATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCC 503179 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | || || || |||| || ||||||||||| |||| || Sbjct 503180 AGAGTCCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAAACGCTGCTGGTCCGGAGGA 503239 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| | | || || | ||| | | | |||||| | ||| ||||| Sbjct 503240 ATGCCTTCCTTGTC-CTGGATCTTGGTCTTCACGTTGTCAATTGTGTCGGAGCTCTCCAC 503298 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || ||||||| || || |||||||| ||||| Sbjct 503299 CTCGAGCGTAATCGTCTTCCCCGTTAGGGTCTTGACGAAGATTTGCAT 503346 >seq6 Length=4135178 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||| || | ||| ||| || || || || |||| Sbjct 622270 CATC-CCTCCACGAAGACGAAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAAT 622212 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || | || || | || |||||| |||| || ||||||||||| |||| Sbjct 622211 CCGCAAGGGTCCGACCGTCCTCGAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGGTCCG 622152 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||||| ||||| | | ||||||| ||| | | | ||||| | ||| Sbjct 622151 GTGGGATTCCTTCCTTGTC-CTGGATCTTTGTTTTGACGTTGTCGATGGTGTCCGAGCTC 622093 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||| ||||| || || || | || || |||||||||||||| Sbjct 622092 TCCACCTCGAGAGTGATTGTCTTCCCAGTGAGCGTCTTGACGAAGATCTGCAT 622040 >seq2 Length=6181961 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||| || | ||| || || || || || || | Sbjct 4454688 CATC-CCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGT 4454630 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| |||| |||| |||| || || ||| |||| || ||||||||||| |||| Sbjct 4454629 CCGCCAAAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCG 4454570 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | || || ||||| | | || || | ||| | | | ||||| | ||| Sbjct 4454569 GTGGGATACCCTCCTTGTC-CTGGATCTTAGTCTTGACGTTGTCGATGGTGTCCGAGCTC 4454511 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | || || || || || || | ||| || |||||||||||||| Sbjct 4454510 TCCACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 4454458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366390956214