Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq25 127 3e-24 seq113 118 1e-21 seq9 109 7e-19 seq1 109 7e-19 seq64 82.4 9e-11 >seq25 Length=1997012 Score = 127 bits (140), Expect = 3e-24 Identities = 335/500 (67%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| | ||||| | || || || | || || ||||| | || || |||||| Sbjct 1919132 TCAAATCTTCCTGGCCTCAGCAGTGCAGCGTCGAGAATATCTGACCTGTTGGTGGCGGCG 1919191 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || || | || ||| || | | ||||| ||||||||||| || || |||||||| | | Sbjct 1919192 ATCACTATAACACCCGTGTTGCCTTCAAAGCCATCCATCTCCGTTAACAGCTGGTTCAAA 1919251 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065 ||||| || |||||||| || || | | | | || | | | ||| ||||||| | Sbjct 1919252 GTTTGCTCTCGTTCATCGTTTCCT--CCTCCGATTCCTGTGCCTCTCTGCCTTCCCACCG 1919309 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 16123 |||||||||| || | ||| || |||||||| ||| || | | | |||| || || Sbjct 1919310 CATCAATCTCGTCGACGAAAACAATGCATGGAGCATTCTC-CTTG-GCCTTCTTGAACAG 1919367 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||||| || | | || || || || ||||||||||||||||| | || | | | | Sbjct 1919368 GTCCCGCACTCTCGAAGCTCCAACCCCGACAAACATCTCCACAAACTCTGACCCCG-AGA 1919426 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 ||| || || || || || ||| || |||||||| ||| || | ||| || |||| Sbjct 1919427 TTGAGAAAAACGGCACGCCAGCTTCTCCTGCAATGGCCTTGGCCAGCAAAGTTTTCCCCG 1919486 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGC-GCCACTTCCAAAGT-- 16299 | ||||| || | || || ||||| || ||||| || |||| | ||| Sbjct 1919487 TCCCTGGAGGCCCAACCAGCAGCACACCTTTCGGTATCTTTGCACCCACAGC---AGTAA 1919543 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAA 16359 | ||||| || | ||| ||||| || || | ||| || || | || || |||||| Sbjct 1919544 ACCTCTCGGGCTTCTTTAGAAACTCTACCACCTCCATGAAATCCTGCTTTGCCTCGTCAA 1919603 Query 16360 TCCCCTCAACATCGGTAAAC 16379 || ||||||| | |||| Sbjct 1919604 CTCCAGCAACATCCGCAAAC 1919623 >seq113 Length=557149 Score = 118 bits (130), Expect = 1e-21 Identities = 304/452 (67%), Gaps = 16/452 (4%) Strand=Plus/Minus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 || || |||||||| || | || ||| || | | ||||| ||||||||||| || || Sbjct 60641 TTGGTGGCGGCGATCACTATAACACCCGTGTTGCCTTCAAAGCCATCCATCTCCGTTAAC 60582 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTT 16053 |||||||| | |||||| || ||||| || || || | | | | || | | | | Sbjct 60581 AGCTGGTTCAAAGTTTGCTCTCGTTCGTCGTTTCCT--CCTCCGATTCCTGTGCCTCTCT 60524 Query 16054 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 || ||||||| ||||||||||| || | ||| || |||||||| ||| || | | | Sbjct 60523 GCCTTCCCACCGCATCAATCTCGTCGACGAAAACAATGCATGGAGCATTCTC-CTTG-GC 60466 Query 16114 CTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 |||| || || ||||| || | | || || || || ||||||||||||||||| | Sbjct 60465 CTTCTTGAACAGGTCCCGCACTCTCGAAGCTCCAACCCCGACAAACATCTCCACAAACTC 60406 Query 16172 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 16230 || | | | |||| || || || || || ||| || |||||||| ||| || | Sbjct 60405 TGACCCCG-AGATTGAGAAAAACGGCACGCCAGCTTCTCCAGCAATGGCCTTGGCCAGCA 60347 Query 16231 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCA 16289 ||| || ||||| ||||| || | || || ||||| || || |||| ||| Sbjct 60346 AAGTTTTCCCCGTCCCTGGAGGCCCAACCAGCAGCACACCTTTCGGTATCCTTGCACCCA 60287 Query 16290 CTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTT 16347 | | ||| | ||||| || | ||| ||||| || || | ||| || || | | Sbjct 60286 CAGC---AGTAAACCTCTCGGGCTTCTTTAGAAACTCTACCACCTCCATGAAATCCTGCT 60230 Query 16348 TGGCGGCGTCAATCCCCTCAACATCGGTAAAC 16379 | || |||||| || ||||||| | |||| Sbjct 60229 TTGCCTCGTCAACTCCAGCAACATCCGCAAAC 60198 >seq9 Length=3666672 Score = 109 bits (120), Expect = 7e-19 Identities = 219/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| || | |||||||| |||||||| || || || ||||| | Sbjct 1728010 AAAACCATCCATCTCAGTGAGCAGCTGGTTGATAGTTTGCTCGCGCTCGTCATTTCC--A 1728067 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| ||||||| | ||| | || |||||||||||||| || ||||| || ||| Sbjct 1728068 CCACCCAGGCCAGCACCTCTCTGCCTGCCGACGGCATCAATCTCGTCGATGAACACAATG 1728127 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||||| | || | | | | || || || | |||| |||||| ||| || |||| Sbjct 1728128 CATGG-AGCCTTCCCCTTG-GCCTTCTCGAACAAGTCCCTTACACGGGAGGCTCCAACAC 1728185 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||| | |||||| || | | ||||| || || ||| || ||| | ||||| Sbjct 1728186 CGACAAAGAGCTCCACGAATTCAGAGGCGGCGCACGAGAAGAACGGCACACCGGCTTCAC 1728245 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||| || | || || | ||| || || || ||||| || |||| ||| | Sbjct 1728246 CAGCAACAGCCCTCGCTAGCAAAGTTTTCCCAGTCCCTGGAGGGCCGACGAGCAGGCAGC 1728305 Query 16270 CTCGTGGAATCTTGGCGCC 16288 || |||||| || || || Sbjct 1728306 CTTTTGGAATTTTAGCACC 1728324 >seq1 Length=6951972 Score = 109 bits (120), Expect = 7e-19 Identities = 219/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| || | |||||||| |||||||| || || || ||||| | Sbjct 3709502 AAAACCATCCATCTCAGTGAGCAGCTGGTTGATAGTTTGCTCGCGCTCGTCATTTCC--A 3709445 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| ||||||| | ||| | || |||||||||||||| || ||||| || ||| Sbjct 3709444 CCACCCAGGCCAGCACCTCTCTGCCTGCCGACGGCATCAATCTCGTCGATGAACACAATG 3709385 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||||| | || | | | | || || || | |||| |||||| ||| || |||| Sbjct 3709384 CATGG-AGCCTTCCCCTTG-GCCTTCTCGAACAAGTCCCTTACACGGGAGGCTCCAACAC 3709327 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||| | |||||| || | | ||||| || || ||| || ||| | ||||| Sbjct 3709326 CGACAAAGAGCTCCACGAATTCAGAGGCGGCGCACGAGAAGAACGGCACACCGGCTTCAC 3709267 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||| || | || || | ||| || || || ||||| || |||| ||| | Sbjct 3709266 CAGCAACAGCCCTCGCTAGCAAAGTTTTCCCAGTCCCTGGAGGGCCGACGAGCAGGCAGC 3709207 Query 16270 CTCGTGGAATCTTGGCGCC 16288 || |||||| || || || Sbjct 3709206 CTTTTGGAATTTTAGCACC 3709188 >seq64 Length=1151164 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG-A 112143 ||| ||| | |||| | ||||||||||| ||||| |||||| | ||||| ||||| | Sbjct 1110753 CCGTGATTTGTTCTATGGCCTCTGGATTCCTGATCTTTTCATGGAACGAGTT-AGGAGCA 1110811 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGT 112202 | || |||||||| | |||||||| || |||| || || | | || ||| | |||| Sbjct 1110812 ATAGCGATTGGTCTTTGTTTTGTCCGAACGAGGCTCCTGGATTGGCTGACTGCTG-GGGT 1110870 Query 112203 GAGGAGTTTGAAGCCCTCTACAC 112225 |||||||||||| | | ||||| Sbjct 1110871 GAGGAGTTTGAAAGCTTGTACAC 1110893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736518465760