Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25 118 1e-21 seq113 111 2e-19 >seq25 Length=1997012 Score = 118 bits (130), Expect = 1e-21 Identities = 332/500 (66%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| | ||||| | || || || | || || ||||| | || || |||||| Sbjct 1919132 TCAAATCTTCCTGGCCTCAGCAGTGCAGCGTCGAGAATATCTGACCTGTTGGTGGCGGCG 1919191 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || || | || ||| |||| | || |||| ||||||||||| || || || ||||| | Sbjct 1919192 ATCACTATAACACCCGTGTTGCCTT--CAAAGCCATCCATCTCCGTTAACAGCTGGTTCA 1919249 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9370 |||||| || |||||||| || || | | | | || | | | ||| ||||||| Sbjct 1919250 AAGTTTGCTCTCGTTCATCGTTTCCT--CCTCCGATTCCTGTGCCTCTCTGCCTTCCCAC 1919307 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||||| || | ||| ||||| ||||| ||| || ||| | | || || Sbjct 1919308 CGCATCAATCTCGTCGACGAAAACAATGCATGGAGCATTCTCCTTGGCCTTCTTGAACAG 1919367 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || || || || || || || || ||||||||||||||||| | || | | | | Sbjct 1919368 GTCCCGCACTCTCGAAGCTCCAACCCCGACAAACATCTCCACAAACTCTGACCCCG-AGA 1919426 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 ||| || || || || || ||| || |||||||| ||| || | ||| || |||| Sbjct 1919427 TTGAGAAAAACGGCACGCCAGCTTCTCCTGCAATGGCCTTGGCCAGCAAAGTTTTCCCCG 1919486 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGC-GCCACTTCCAAAGT-- 9606 | ||||| || | || || |||| || ||||| || |||| | ||| Sbjct 1919487 TCCCTGGAGGCCCAACCAGCAGCACACCTTTCGGTATCTTTGCACCCACAGC---AGTAA 1919543 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAA 9666 | ||||| || | ||| ||||| || || | ||| || || | || || |||||| Sbjct 1919544 ACCTCTCGGGCTTCTTTAGAAACTCTACCACCTCCATGAAATCCTGCTTTGCCTCGTCAA 1919603 Query 9667 TCCCCTCAACATCGGTAAAC 9686 || ||||||| | |||| Sbjct 1919604 CTCCAGCAACATCCGCAAAC 1919623 >seq113 Length=557149 Score = 111 bits (122), Expect = 2e-19 Identities = 220/319 (69%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 9243 TTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCA 9300 || || |||||||| || | || ||| |||| | || |||| ||||||||||| || | Sbjct 60641 TTGGTGGCGGCGATCACTATAACACCCGTGTTGCCTT--CAAAGCCATCCATCTCCGTTA 60584 Query 9301 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCG 9358 | || ||||| | |||||| || ||||| || || || | | | | || | | | Sbjct 60583 ACAGCTGGTTCAAAGTTTGCTCTCGTTCGTCGTTTCCT--CCTCCGATTCCTGTGCCTCT 60526 Query 9359 TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 9418 ||| ||||||| ||||||||||| || | ||| ||||| ||||| ||| || ||| Sbjct 60525 CTGCCTTCCCACCGCATCAATCTCGTCGACGAAAACAATGCATGGAGCATTCTCCTTGGC 60466 Query 9419 GATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9478 | | || || || || || || || || || || ||||||||||||||||| | Sbjct 60465 CTTCTTGAACAGGTCCCGCACTCTCGAAGCTCCAACCCCGACAAACATCTCCACAAACTC 60406 Query 9479 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9537 || | | | |||| || || || || || ||| || |||||||| ||| || | Sbjct 60405 TGACCCCG-AGATTGAGAAAAACGGCACGCCAGCTTCTCCAGCAATGGCCTTGGCCAGCA 60347 Query 9538 GAGTCTTACCCGTACCTGG 9556 ||| || ||||| ||||| Sbjct 60346 AAGTTTTCCCCGTCCCTGG 60328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975209931920