Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq758 672 0.0 >seq758 Length=186484 Score = 672 bits (744), Expect = 0.0 Identities = 744/992 (75%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | ||||||||| ||| | ||| ||| | || ||||| || | || |||||| Sbjct 93100 TGGGGTCGCTTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTC 93159 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858 || || |||||||| || || ||||| | ||||| | ||||| || || ||| Sbjct 93160 GGTGTACTGATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATC 93219 Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918 || ||||| || || || || || || || || || ||||| ||||||| || || || Sbjct 93220 GCAGCTCCGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATAC 93279 Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978 || ||||| || ||||||||||| || | || | ||| ||| || ||| | |||||| Sbjct 93280 GGGAACAATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTC 93339 Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038 || ||||| |||||||| ||||| |||| || ||||| || ||||| ||||| | | || Sbjct 93340 TACCCCATTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAA 93399 Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098 || |||| | ||||||||| |||| | | ||||||||||||||||||||||||| Sbjct 93400 CTAATCGTTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTT 93459 Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCA 180158 | ||||||||||||||||| |||||| || || || || || || || || || Sbjct 93460 AGCTTCCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCC 93519 Query 180159 GCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCC 180218 || | || || || | |||| ||| | |||||||| ||||| |||| ||||| Sbjct 93520 GCCACCGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCT 93579 Query 180219 CTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTG 180278 | || || |||||||||||||||| ||| | || |||||||| || ||||||||||| Sbjct 93580 TTAGGAATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTT 93639 Query 180279 ATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCA 180338 ||||| || ||||||||| |||| || || || || |||||||| || || ||| || Sbjct 93640 ATGCATCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCT 93699 Query 180339 ATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAG 180398 ||||| ||||| |||| || ||| ||| | || ||||||||||| | ||| ||| Sbjct 93700 ATGCATGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCT 93759 Query 180399 AACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGA 180458 ||| ||||||| ||||||||| ||||| || || || ||||| || ||||| || || Sbjct 93760 AACGCGGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGT 93819 Query 180459 TACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 180518 ||||||||||| |||||||||| ||||| || || ||||||||||| || ||||| Sbjct 93820 TACTTCGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTT 93879 Query 180519 TTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATG 180578 ||| |||| || ||||| || || || |||||||| || || ||||| ||||||| ||| Sbjct 93880 TTCTTGGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATG 93939 Query 180579 GCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTG 180638 || |||||||| |||||||||||||| ||||| ||| | ||||| | || || ||||| Sbjct 93940 GCTTTCAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTC 93999 Query 180639 CTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAG 180698 | ||||| ||||| ||| | |||||||||| || |||||||| |||||||| || Sbjct 94000 ATAAACACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAA 94059 Query 180699 CGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 ||||| |||||||||||||| || || ||||| Sbjct 94060 CGTAACGCTCACAACTTCCCTCTAGATCTGGC 94091 Score = 354 bits (392), Expect = 1e-92 Identities = 687/1008 (68%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 |||||| ||| | | ||||| |||| || ||||| ||||||| ||| ||| || Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || ||| ||| | | || || ||| |||| || || |||| ||| || || || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTG 181615 ||||| ||||||||||| |||||| | |||||| || | ||||| | |||| Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 181616 TCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAG 181675 || || || || || | ||||| | | | ||||||||||| || || || Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 181676 GGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 181735 || |||||| ||| ||| |||| | || || || ||| | || || || ||||| || Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 181736 GCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAAT 181794 || || | | | || ||| |||| | | |||| ||||| ||||| ||| | ||| Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGTGC--AAT 34265 Query 181795 C-CGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTC 181853 | || || || || || || || ||||||| ||| || || || | || | |||| Sbjct 34266 CGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCT 34325 Query 181854 TCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGA 181913 | ||| |||| |||| || ||| || |||| | || || || | |||||| || || | Sbjct 34326 TGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCA 34385 Query 181914 TTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATA 181973 | ||||| | | | ||| ||| ||||| | ||||||||||| ||||| || || |||| Sbjct 34386 TCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATA 34445 Query 181974 TGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTC-TGCAATTCACGGTGTGACC 182032 ||||||| |||||||| | | ||||| || | | | | ||| | |||||| | ||| Sbjct 34446 TGATGGGAGTTGCTGGAGTACCGGGTGCTGC-TCCCCCACGTGCTACTCACGGCGCAACC 34504 Query 182033 GTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCA 182092 ||||||||||| |||| | || ||||| || ||||| ||| || | | || | Sbjct 34505 GTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCG 34564 Query 182093 ACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTC 182152 || ||| ||||| || ||||| |||||||| || || ||||| ||||| || | | | Sbjct 34565 ACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCC 34624 Query 182153 GGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 182212 ||| |||| ||| || | ||| || ||| ||| | || || || || | Sbjct 34625 GGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACT 34684 Query 182213 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 182272 ||| ||| ||| | || || | ||||||| || | || || || || |||||| Sbjct 34685 GGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGAC 34744 Query 182273 TTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAG 182332 || || ||||| || | | ||| ||||||| || |||||||| || ||||||||| Sbjct 34745 TTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAG 34804 Query 182333 AACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAG 182392 || ||||| | |||||| ||| | ||||| ||| | ||| | ||||| || ||||| Sbjct 34805 AATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAA 34864 Query 182393 AACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACTGTGA 182440 ||| | || ||||| ||||| || ||||| | || ||||| || ||| Sbjct 34865 AACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGA 34912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610391016490320