Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq758 491 5e-134 seq43 82.4 9e-11 >seq758 Length=186484 Score = 491 bits (544), Expect = 5e-134 Identities = 687/957 (72%), Gaps = 10/957 (1%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| ||||| ||||| || ||||| || | | | || ||| | | ||||| Sbjct 93149 TTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTA 93208 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 ||| || || ||||| || || || ||||| ||||| || | || || || | |||| Sbjct 93209 CTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTT 93268 Query 169562 CTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCG 169621 || | | || || ||||| || ||||||||||| || | || | || |||||||| Sbjct 93269 CTCTTATATACGGGAACAATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCG 93328 Query 169622 GACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTG 169681 | | ||||||||||| || |||||||| ||| || ||||||||||| | || || || | Sbjct 93329 GTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCG 93388 Query 169682 GTCCTTATCAGTTGGTAATC-TTC--CACTTCCTTATTGG--TATCTCAGCATACATGGG 169736 |||| || | | |||| ||| |||||||| |||| || || || |||||||| Sbjct 93389 GTCCCTACGAACT---AATCGTTCTTCACTTCCTGCTTGGAGTAGCTT-GC-TACATGGG 93443 Query 169737 AAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTC 169796 | |||||||||| | | | || || ||||| ||||||||| |||||| ||||| Sbjct 93444 TCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTC 93503 Query 169797 TGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATT 169856 || || || | || || ||| || || || | ||||| ||||||| || || Sbjct 93504 AGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTT 93563 Query 169857 CTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGC 169916 ||| || |||||||| |||| ||||| || || |||||||||||| |||| |||||||| Sbjct 93564 CTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGC 93623 Query 169917 AGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGG 169976 || || ||||| || |||||||| ||||||||| || || || || | ||||| || Sbjct 93624 TGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGG 93683 Query 169977 ATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAAC 170036 |||| ||||| || ||||||||||| | || ||||| || ||| | ||||| || Sbjct 93684 ATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCAC 93743 Query 170037 AGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACAT 170096 ||| | || || ||| ||||| | ||| || || ||||| |||||||| ||||| Sbjct 93744 TGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACAT 93803 Query 170097 AGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTC 170156 ||||| || ||||||||||| ||||| | |||||||| |||||| || || ||||| Sbjct 93804 TGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTC 93863 Query 170157 AAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTAT 170216 | |||||||| ||| | || | || || || ||| || | ||||| ||| || | Sbjct 93864 CCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTT 93923 Query 170217 GGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGA 170276 ||| || |||||||||| |||||| | || |||||||||||||||||||| || ||||| Sbjct 93924 GGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGA 93983 Query 170277 TGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTAT 170336 | | ||| || | ||||||| || || | ||| | || ||| | ||||| Sbjct 93984 TAGCCAGGGACGTGTCATAAACACATGGGCCGACATTATCAACCGCGCCAACCTTGGTAT 94043 Query 170337 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 ||| |||||||||||| | || || ||||||||||| ||||| || || || | ||| Sbjct 94044 GGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 212 bits (234), Expect = 7e-50 Identities = 666/1029 (65%), Gaps = 31/1029 (3%) Strand=Plus/Plus Query 170541 GACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTG 170600 || ||| || || |||||| ||||||| |||| | || |||||||||| | ||||| Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660 ||| |||| || | || ||| ||||||||| || || || | || || ||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720 || || || || | ||| || |||| ||||| | |||| || || | || | Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 170721 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 170780 ||||| || | | || | ||| | | ||| |||||||| || || || ||| Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 170781 GGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGA 170840 || || ||||||| ||| | || ||| |||||| ||| || || | ||||| Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 170841 GTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATC 170900 | ||||| | || ||| ||| | | |||| || |||| || ||| | ||| Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATC 34266 Query 170901 A-GACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT--CTTCACTAGCATCTTT 170957 | || || |||||| |||| || || ||| ||||| || || | | ||| || Sbjct 34267 GCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTT 34326 Query 170958 CTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCA 171017 |||| |||| | || ||| | || |||| | |||||| | |||||| ||||| Sbjct 34327 --GATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCC 34384 Query 171018 ATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCAC 171077 || || || | ||| | || || ||| |||| || || | || || ||||| Sbjct 34385 ATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCAT 34444 Query 171078 ATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACA 171137 |||||||| ||||| ||| ||| |||| || | |||| | ||| || ||||| Sbjct 34445 ATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACC 34504 Query 171138 GTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACA 171197 ||| |||| ||| ||| || || | | || | |||| Sbjct 34505 GTGGAGAATACACTGTTCGAGGAT------GGTGATGGCGCGAATA-------------- 34544 Query 171198 ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAAC 171257 ||||||| |||| |||| || || ||||| ||||| ||| |||| || || Sbjct 34545 -CATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAAT 34603 Query 171258 AGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTT 171317 | || ||||| || | || ||| |||| | | |||||| | | |||||||| Sbjct 34604 CGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCC 34663 Query 171318 ATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCA 171377 ||||| ||||| || |||| ||| ||| |||| || | || |||||||| Sbjct 34664 ATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCC 34723 Query 171378 CTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAG 171437 | || || | || || || || || || || ||| | | ||||||||||| || ||| Sbjct 34724 CCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAG 34783 Query 171438 TTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCA 171497 ||||| ||| ||||| |||||||| || ||||| ||||| | || |||||| || Sbjct 34784 TTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCA 34843 Query 171498 --TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTA 171555 |||| || || || ||||| ||| |||||||||| || || || |||| | || | Sbjct 34844 GCTCAG--GATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAA 34901 Query 171556 ACGCACTTT 171564 |||| |||| Sbjct 34902 ACGCTCTTT 34910 >seq43 Length=1658784 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| | |||||||| ||||| || || || || ||||| | ||||||||| Sbjct 1281184 GAGAATCCGGGATGGTACACGCAGTACACACCTTACCAGGCCGAGATCGCCCAGGGAAGA 1281125 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 ||||| | | |||||||||| || | ||| | || || || || || || || | Sbjct 1281124 TTGGAGTCGCTTCTCAATTACCAGACCATGATCGCCGAGCTCACGGGCTTGCCGATGTCC 1281065 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||||| || ||| | || |||| ||| || || || || || ||| Sbjct 1281064 AACGCTTCGCTACTCGACGAAGGAACCGCTGCTGCCGAGGCCATG 1281020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207311958720