Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq758 627 1e-174 >seq758 Length=186484 Score = 627 bits (694), Expect = 1e-174 Identities = 742/996 (74%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||||| ||| | || | || | || || ||||| || | || |||||||| ||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAA-AATCGCCTTTACATTGGGTGGTTCGGTGTACT 93167 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || ||||| | ||||| || || ||||| || || |||| |||| Sbjct 93168 GATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTC 93226 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || ||||| || || || ||||| ||||||| || || || || |||| Sbjct 93227 CGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACA 93286 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || ||||||||||| || |||| | || ||||| || | |||||||| |||| Sbjct 93287 ATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCA 93346 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| ||||| | ||||| ||| | || ||||| ||||| | | ||||| | | Sbjct 93347 TTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCG 93406 Query 168161 TCTTTCACTTCCTCATCGG--TATCTATGCATACATGGGACGTGAATGGGAACTTTCATA 168218 | |||||||||| | || || || ||| |||||||| ||||| ||||||||| | Sbjct 93407 TTCTTCACTTCCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTT 93464 Query 168219 TCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAG 168278 || || |||||||| || |||||| |||||| ||||| || || || || || || | Sbjct 93465 CCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCAC 93524 Query 168279 TGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGG 168338 || || || | | || ||| | |||||||| || ||||| || | ||||| | || Sbjct 93525 CGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGG 93584 Query 168339 AATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCA 168398 |||||| || || ||||||| ||| | || ||||||||||| ||||| || || ||||| Sbjct 93585 AATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCA 93644 Query 168399 TCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCA 168458 ||| ||||| ||| | || || ||||| ||||| || || | | || ||||||||||| Sbjct 93645 TCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCA 93704 Query 168459 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTA 168518 || ||||| |||||| || | | || || ||||| | |||||| ||| Sbjct 93705 TGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGC 93764 Query 168519 CGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTT 168578 ||||||| ||| || || ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 93765 GGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTT 93824 Query 168579 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 168638 |||||| |||||||||||||| ||| || || |||||||| ||| | ||||| ||| | Sbjct 93825 CGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTT 93884 Query 168639 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 168698 ||||| ||||| || || || |||||||| ||||| | ||| | ||| ||||| || Sbjct 93885 GGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTT 93944 Query 168699 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 168758 |||||| |||||||||||||| ||||| ||| | ||||| | ||||| ||||| | || Sbjct 93945 CAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAA 94004 Query 168759 CACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 168818 ||| ||||| || || | |||||||| || |||||||| ||||||||||| ||||| Sbjct 94005 CACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAA 94064 Query 168819 CGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 ||| ||||||||||| || ||||| ||| | | ||| Sbjct 94065 CGCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 288 bits (318), Expect = 1e-72 Identities = 678/1014 (67%), Gaps = 16/1014 (2%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 |||||| ||| | | ||||| |||| |||| | ||| ||||||||||| |||||| Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||||||| | || || || ||| |||| |||||| | | ||| || || || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTA---GAAGG-CGCTAACTTCCTCACTGCTGC 169494 ||||| |||||| | ||| |||| || || || ||| |||| || || | || Sbjct 34028 TACACTCACGGATTGGCT---AGTTCCTATCCGGAGGGTCGC-AACTCTCTTACCGTCGC 34083 Query 169495 TGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGC 169554 || || || || || | ||| || | || ||||| |||||||| || || Sbjct 34084 TGCATCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGC 34143 Query 169555 ACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCA 169614 ||||| |||||| || ||||| ||||| |||||||| |||| ||| || || || || Sbjct 34144 GCAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCA 34203 Query 169615 TGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACG-TCTTATTG 169673 |||||| |||| ||||| ||| ||| | | || | ||| | || || ||| || Sbjct 34204 TGGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTG--TG 34261 Query 169674 GCATC-CGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGT--CAGTG 169730 ||| ||||| ||||| || || || || || | ||| || || || | ||| | || Sbjct 34262 CAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTA 34321 Query 169731 TCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTAT 169790 || || ||| | || | || |||||| |||| | || ||| || || ||| Sbjct 34322 TCCTTG--ATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAG 34379 Query 169791 CAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCAT 169850 |||| |||||| | | | | | ||| || || |||| || ||||| | || || | Sbjct 34380 CAGCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGT 34439 Query 169851 TCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTG 169910 | || |||||||| || || ||| | ||| | || | ||||| || || | Sbjct 34440 TTCATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCG 34499 Query 169911 TTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTG 169970 || || ||||| ||| ||| || || ||||| || ||||| ||| || | Sbjct 34500 CAACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCA 34559 Query 169971 ATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGA 170030 || |||| || |||||||||||||| ||||| ||||| || ||||| ||||| || | Sbjct 34560 ATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAA 34619 Query 170031 TCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTG 170090 | |||| |||| | ||||| ||| || || || |||||| || || || | Sbjct 34620 CATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCG 34679 Query 170091 TTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTT 170150 | | ||| ||| ||||||| | |||| || || | ||||| || || | Sbjct 34680 TCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGT 34739 Query 170151 ACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACA 170210 | || ||||| |||||| | | |||||||||||||| || || || || |||| Sbjct 34740 ATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACA 34799 Query 170211 CCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCAC 170270 | || || || || | |||||| || ||||||| ||| ||||| || ||||| || | Sbjct 34800 CAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTC 34859 Query 170271 ATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACTGTGAT 170324 |||||||| || | ||||| || || ||||| || | || ||||| || |||| Sbjct 34860 ATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574468156862640