Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq758 471 5e-128 seq43 87.8 2e-12 >seq758 Length=186484 Score = 471 bits (522), Expect = 5e-128 Identities = 709/996 (71%), Gaps = 20/996 (2%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||||| ||| | ||| || | || | |||| |||| |||||||||||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | ||||| ||| || || ||||| || Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| ||||| || | || || ||| | |||||| | |||| || ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || | || | || ||| || ||| | ||||||||||| || Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | | ||||||||| | ||||| || ||||| || | | |||| Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACT---AATC 93405 Query 172120 -TTC--CACTTCCTTATCGG--TATCTCAGCATACATGGGAAGACAGTGGGAACTATCAT 172174 ||| |||||||| | || || || || |||||||| | |||||||||| | Sbjct 93406 GTTCTTCACTTCCTGCTTGGAGTAGCTT-GC-TACATGGGTCGTGAGTGGGAACTTAGCT 93463 Query 172175 ACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCAT 172234 | | || |||||| | || ||||| ||| || || ||||| ||||| |||| || Sbjct 93464 TCCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCA 93523 Query 172235 TTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAG 172294 || || || | | || || | ||||| || ||||| || |||||||| ||| Sbjct 93524 CCGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAG 93583 Query 172295 GTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGC 172354 | ||||| || || |||||||||||| ||||||||||||| || || ||||| || |||| Sbjct 93584 GAATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGC 93643 Query 172355 ATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGC 172414 |||| ||||||||| || || || || | || || |||||| ||||| || |||| Sbjct 93644 ATCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGC 93703 Query 172415 ACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACT 172474 | ||||| || || || ||| || ||| | || || ||||| ||||| ||| Sbjct 93704 ATGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACG 93763 Query 172475 ACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACT 172534 || |||| ||| || || ||||| |||||||| ||||| ||||| || |||||||||| Sbjct 93764 CGGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACT 93823 Query 172535 TTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 172594 | ||||| | |||||||| |||||| || || ||||| | || ||||| ||| Sbjct 93824 TCGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCT 93883 Query 172595 TAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 172654 | || | || || || ||| || | ||||| ||| || |||| || | |||||||| | Sbjct 93884 TGGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTT 93943 Query 172655 TCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTT 172713 ||||||| |||||||||||||| |||||||| || || ||| || | || | | || | Sbjct 93944 TCAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCA--GGGACG--TG-T 93998 Query 172714 CCT----ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGA 172769 | | ||||||| ||| || | ||| | || ||||| |||||||| ||||||||||| Sbjct 93999 CATAAACACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGA 94058 Query 172770 AAGAAATGCACACAACTTCCCATTAGACCTTGCTTC 172805 | | || || ||||||||||| |||| || ||||| Sbjct 94059 ACGTAACGCTCACAACTTCCCTCTAGATCTGGCTTC 94094 Score = 206 bits (228), Expect = 3e-48 Identities = 660/1025 (64%), Gaps = 23/1025 (2%) Strand=Plus/Plus Query 172963 GACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTCTA 173022 || ||| || || |||||| ||||| | |||| | || |||||||||| | ||||| Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 173023 CCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGG 173082 ||| |||| || | ||| ||| ||||||||| || || || | || || ||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 173083 TATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTC 173142 || || || || | || ||| |||| || || |||| | | || | || | Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 173143 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 173202 ||||| || | | || | ||| | | ||| |||||||| || || || ||| Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 173203 GGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGA 173262 || ||| ||||||| ||| | || || ||||||| ||| || || | ||||| Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 173263 GTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATC 173322 | ||||| | || ||| ||| | || || | || |||| || ||| | ||| Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATC 34266 Query 173323 A-GACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTT 173381 | || || |||||| |||| || || ||| ||||| || | | | | | || Sbjct 34267 GCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTT 34326 Query 173382 AATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAAT 173441 ||| | || | || ||| | || |||| | |||||| | |||||| ||||| || Sbjct 34327 GATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCAT 34386 Query 173442 CTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACAT 173501 ||| || | ||| | || || ||| |||| || || | || || ||||| || Sbjct 34387 CTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATAT 34446 Query 173502 GATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGT 173561 |||||| ||||| ||| ||| |||| || | | |||| | ||| || ||||| || Sbjct 34447 GATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGT 34506 Query 173562 GCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAAC 173621 | |||| ||| ||| || || | ||| || || | || Sbjct 34507 GGAGAATACACTGTTCGAGGA------------TGGTGATGGCGCGAAT---------AC 34545 Query 173622 TTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAG 173681 ||| | || | |||| || || ||||| |||||| ||| |||| || || | Sbjct 34546 ATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCG 34605 Query 173682 ATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCAT 173741 || ||||| || | || ||| | || | |||||| | | |||||||| ||| Sbjct 34606 CTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCAT 34665 Query 173742 GTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACT 173801 ||| |||||||| |||| ||| ||| | || || | || ||||| || | Sbjct 34666 GTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCC 34725 Query 173802 TAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTT 173861 || || | || || ||||| || || || ||| | | |||||||||||||| ||||| Sbjct 34726 GAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTT 34785 Query 173862 CGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATC 173921 ||| ||| ||||| |||||||| || ||||| ||||| | || |||||| || | Sbjct 34786 CGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGC 34845 Query 173922 TGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGC 173981 | ||||| || ||||| ||| ||||||| || || || || |||| | || ||||| Sbjct 34846 TCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGC 34905 Query 173982 ACTTT 173986 |||| Sbjct 34906 TCTTT 34910 >seq43 Length=1658784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 157903 ACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCT 157962 |||||| || || || || | || ||| | | |||||||| | |||||||| Sbjct 1281220 ACCATCGTCCCGCCCGTGATCCTTCGCAACATCATGGAGAATCCGGGATGGTACACGCAG 1281161 Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 ||||| || || || || ||||| | |||||||||||||| | | |||||||||| Sbjct 1281160 TACACACCTTACCAGGCCGAGATCGCCCAGGGAAGATTGGAGTCGCTTCTCAATTACCAG 1281101 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || | ||| | || ||||| || | ||||| | ||||| || ||| | || |||| | Sbjct 1281100 ACCATGATCGCCGAGCTCACGGGCTTGCCGATGTCCAACGCTTCGCTACTCGACGAAGGA 1281041 Query 158083 ACTGCAGCAGCAGAAGCAATG 158103 || || || || || || ||| Sbjct 1281040 ACCGCTGCTGCCGAGGCCATG 1281020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045628214880