Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq758 650 0.0 >seq758 Length=186484 Score = 650 bits (720), Expect = 0.0 Identities = 736/984 (75%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||||| ||| | || ||| | || ||||| || | || |||||||| |||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || ||||| | |||||| || || ||||| || || |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || ||||| || || || ||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||||||||| || | || | ||| ||| || ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||| ||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | ||||||||| | || | | ||||||||| ||||| |||||||| | ||| Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCG 93467 Query 162744 TCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 | |||||||| || |||||| || || ||||| || ||||||||||| || | || Sbjct 93468 CTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGC 93527 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 162863 || || || |||| ||| | |||||||| ||||| |||| ||||| || || || Sbjct 93528 CGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAAT 93587 Query 162864 CAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCC 162923 | ||| || ||||||| ||| | || |||||||| || |||||||| || |||||||| Sbjct 93588 CTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCC 93647 Query 162924 CTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGG 162983 ||||||||||||||||| || || || ||||| || || || |||||||| ||||| || Sbjct 93648 GTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGG 93707 Query 162984 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 163043 ||| ||||| || ||| || |||| || || ||||| | ||| || ||| || Sbjct 93708 TTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGG 93767 Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 ||||| ||| ||||| ||||| || ||||| ||||| || || || || ||||||||||| Sbjct 93768 TTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGG 93827 Query 163104 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 163163 ||| ||||||||||||||||| || || |||||||||||| | ||||| ||| | || Sbjct 93828 TCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGC 93887 Query 163164 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 163223 ||| ||||| || || || |||||||| ||||| | ||| | || ||||| ||||| Sbjct 93888 TGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAA 93947 Query 163224 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 163283 ||| |||||||||||||| ||||| ||| | ||||| | ||||| ||||| | ||||| Sbjct 93948 CCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACAC 94007 Query 163284 CTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGC 163343 ||||| ||| || | ||||| || | |||||||| |||||||| || || || || Sbjct 94008 ATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGC 94067 Query 163344 TCACAACTTCCCACTTGACCTGGC 163367 |||||||||||| || || ||||| Sbjct 94068 TCACAACTTCCCTCTAGATCTGGC 94091 Score = 264 bits (292), Expect = 1e-65 Identities = 675/1022 (66%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||| ||| | | | || ||||| | ||| | ||| ||||||| Sbjct 33896 TTTGATAACACGGATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGT 33955 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || |||||||| ||| ||| | | || || ||| | || |||||||||| Sbjct 33956 CTATCGCTTCTTCCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCT 34015 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||||| || ||| |||| | |||||||| |||||| || | ||| Sbjct 34016 GTCACCTCACGGTACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTT 34075 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGT 163860 || | |||| || || || || || | ||||| | | | || |||||| Sbjct 34076 ACCGTCGCTGCATCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGT 34135 Query 163861 CCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTG 163920 || ||||| || || |||||| ||| ||| |||| | || || || |||| || || Sbjct 34136 CCCGAGGCGCAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTC 34195 Query 163921 GCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC 163980 || ||||| || || |||| | | || ||| ||| | || |||| ||||| ||||| Sbjct 34196 GCCCTCCATGGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGA 34255 Query 163981 -CTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || |||| | || || || || || || || || | ||| || || || | | Sbjct 34256 TCTG--TGCAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTG 34313 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || || | | ||| | || |||| || || || |||| | ||| || | | Sbjct 34314 TTCCCGTATCCTTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCG 34373 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || ||||| |||||| ||| | || | ||| ||| || | ||||| ||||| | | Sbjct 34374 GTGTAGCAGCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCA 34433 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || |||||||||||||||||||| ||| || | || | | ||||| || Sbjct 34434 ACCCGTTTCATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTC 34493 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 |||| | || || || |||||| ||| || ||||| || || || || || | Sbjct 34494 ACGGCGCAACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCG 34553 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | | || |||| || |||||||||||||| ||||| ||||| || ||||| |||| Sbjct 34554 CCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGT 34613 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || | | ||||||||| | ||||| || || || || |||||| || | Sbjct 34614 CCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCG 34673 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| | ||| ||||||| | |||| || || | ||||| | Sbjct 34674 TACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGC 34733 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 | || || || || || || ||| | | |||||||||||||| |||||||| ||| Sbjct 34734 GGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTC 34793 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 || || ||||| || | | ||| || || | ||||| ||| | ||| | || | Sbjct 34794 CTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATC 34853 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| | || ||||| || || || || || | || || || |||| Sbjct 34854 AGCCTCATGAAAAC--CTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTG 34911 Query 164637 AT 164638 || Sbjct 34912 AT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557578716891600