Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq758 589 2e-163 >seq758 Length=186484 Score = 589 bits (652), Expect = 2e-163 Identities = 725/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||||||||| | |||||||| | || || || || | || |||||||| || || Sbjct 93108 CTTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACT 93167 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||||||| || || | | |||||| || || ||||| | || || ||| |||| Sbjct 93168 GATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTC 93226 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 | || || || || || ||||| ||||| || ||| ||||||| || || || || |||| Sbjct 93227 CGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACA 93286 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | || ||||||||||| || | || | || ||||| ||| | |||||||| |||| Sbjct 93287 ATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCA 93346 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| | | || || ||| | ||||| || ||||| | | |||| | | Sbjct 93347 TTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCG 93406 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | ||||||||| |||| | | ||| |||||||||||||||||||| | || Sbjct 93407 TTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCC 93466 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 | | |||||||| || |||||| |||||| ||||| || || || || || || | | Sbjct 93467 GCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCG 93526 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 | || || | |||| ||| | |||||||| ||||| |||| |||||| | || | Sbjct 93527 CCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAA 93586 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 ||||||| || ||||||| ||| | || |||||||| || ||||||||||| ||||| | Sbjct 93587 TCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATC 93646 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | ||||| ||| | || || ||||||||||||||||| ||||| |||||||| ||||| | Sbjct 93647 CGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATG 93706 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 |||| |||| || ||| ||| | || |||||||| || | ||| ||| ||| | Sbjct 93707 GTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGG 93766 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 |||||| ||| ||||||||||| || || |||||||| || |||||||| |||||||||| Sbjct 93767 GTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCG 93826 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 |||| ||||||||||||| || ||| || |||||||| || || ||||| ||||||| Sbjct 93827 GTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGG 93886 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925 | || ||||| || || |||||||||| |||| Sbjct 93887 CTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCA 93946 Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAG-GTTCTGCCT 167984 |||| |||||||||||||| ||||| || | ||||||| | || | | || | Sbjct 93947 ACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAG-CCAGGGACGTGTCATAAAC 94005 Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 || ||||| ||| | ||||||| || || |||||||| |||||||| || ||||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAAC 94065 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 ||||||||||||||||| || || ||| | | ||| Sbjct 94066 GCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 309 bits (342), Expect = 3e-79 Identities = 680/1012 (67%), Gaps = 14/1012 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 |||||| ||| | | || ||||| | || || ||| ||||||| || ||| || Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | || ||||||||| | || || || ||| ||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-CGCAAACTTTCTTACTGCGGCAGT 168673 || |||||||| ||||| |||||||||| |||||| ||||| || |||||| | || | Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAA-CTCTCTTACCGTCGCTGC 34086 Query 168674 TAGTACTCCAGC--AGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCA 168731 || || || | | | | | ||||| | | | | || |||||||| ||||| Sbjct 34087 ATCCACCCCCGCCAACAGCCCA--GCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCG 34144 Query 168732 CAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 ||||| |||||| | | ||||| ||| | || || || ||| | || || || ||||| Sbjct 34145 CAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCAT 34204 Query 168792 GGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGT 168851 || ||||| | | | || ||| ||| | || || | ||||| || || ||| || Sbjct 34205 GGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCG----ATCTGT 34260 Query 168852 ---ATC-CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGT 168907 ||| ||||| || || || || ||||| || | ||| ||||| |||| |||| ||| Sbjct 34261 GCAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGT 34320 Query 168908 CTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTC 168967 | | ||| | || |||| || || || |||||| ||| || | ||| || | Sbjct 34321 ATCCTTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGC 34380 Query 168968 AGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATT 169027 ||| |||||||||| | | ||| ||| || || ||||||| ||||| || || || || Sbjct 34381 AGCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTT 34440 Query 169028 TCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGT 169087 |||||||||||| || || || | ||| | || | ||| | ||| || | Sbjct 34441 TCATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGC 34500 Query 169088 TACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGA 169147 || || |||||||| |||| | |||||||| || ||||| ||| || | | Sbjct 34501 AACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAA 34560 Query 169148 CAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGAT 169207 || || || ||||| ||||| ||||||||||| || || || ||||| || | Sbjct 34561 TCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAAC 34620 Query 169208 CTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 169267 | ||| |||| | || || | ||| || ||| ||| | || || || || Sbjct 34621 ATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGT 34680 Query 169268 TATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTA 169327 | ||| ||| ||| | || || | ||||||| || | || || || || || Sbjct 34681 CACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTA 34740 Query 169328 TGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACAC 169387 |||||| || ||||| ||| | | |||||||||||||| ||||| || || ||||| Sbjct 34741 TGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACAC 34800 Query 169388 CAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCA 169447 ||||| || || | ||| || ||| ||||||| ||| | ||| || ||||| ||||| Sbjct 34801 AAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCA 34860 Query 169448 TGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCTGTGA 169499 ||| ||| | || ||||| ||||| || || ||||| || || || || ||| Sbjct 34861 TGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGA 34912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560602688239200