Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq758 475 5e-129 >seq758 Length=186484 Score = 475 bits (526), Expect = 5e-129 Identities = 694/975 (71%), Gaps = 6/975 (1%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || ||||| | ||| |||| ||||| ||||| || ||||| || ||| | | Sbjct 93130 ACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAACT 93189 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || ||| | ||||| || || ||||| || || || || ||||| ||||| || Sbjct 93190 GCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTATT 93249 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| |||||||| | || || || ||||| || |||||||||||| || | Sbjct 93250 CGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTATC 93309 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || | || ||| ||||| || ||||||||||| || |||||||| ||| | |||| Sbjct 93310 CCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGAT 93369 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||||| ||||| || || || | | |||| | | | |||||||| |||| | Sbjct 93370 GAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGTA 93429 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| | | | || |||||| | ||||||||| Sbjct 93430 GCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGATC 93489 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| ||||| || ||||| | || ||| || || || | | || || | Sbjct 93490 GCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTATT 93549 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||| || | |||||| | ||||||||||| || ||||||| ||| Sbjct 93550 GGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTATG 93609 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 | || ||||| ||||| |||||||| || ||||| || ||||||||||| ||||||||| Sbjct 93610 ATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGGCT 93669 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 || || ||||| || || | ||| ||| ||||| ||||| | || || ||| || Sbjct 93670 GGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCCTG 93729 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||| | || || |||||| | ||||| ||| ||||||| ||| || || || ||| Sbjct 93730 ATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAGAG 93789 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC- 216033 |||||||| ||||| |||||||| ||||||||||| ||||| | ||||||||||| || Sbjct 93790 GAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATGCT 93849 Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093 | |||| || ||||| | || ||||| ||| | || || | || || | |||| Sbjct 93850 AGCTTT-AATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTAT 93908 Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAA 216153 |||| || || |||| | || ||||| |||||||| |||||||||||||| || Sbjct 93909 CTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTAA 93968 Query 216154 CCAGTCTGTCGTAGA-CGCATCTGGTA-AAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||| || || || || || | || | || || || ||||| ||| || | ||| Sbjct 93969 CCAATCCGTAGTTGATAGC--CAGGGACGTGTCATAAACACATGGGCCGACATTATCAAC 94026 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || ||||||||||| || ||||| || |||||||||||||||||||| |||| Sbjct 94027 CGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGAT 94086 Query 216272 TTGGCTGCTGCTGAA 216286 ||||| | | |||| Sbjct 94087 CTGGCTTCCGTTGAA 94101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745074540351840