Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq758 715 0.0 >seq758 Length=186484 Score = 715 bits (792), Expect = 0.0 Identities = 756/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||||| ||| | || ||| | ||||| || || | || ||||| ||||| ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || ||||| | |||||| || || ||||| |||||| | ||||| || Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 || || ||||| |||||||| ||||| ||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 || |||||||||||| || |||| ||||| ||| || ||| | ||||||||||| || Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 |||||||| || || ||||||| ||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 | | ||||||||| | || | ||||||||| ||||||||||||||| | ||| Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCG 93467 Query 182153 CTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 182212 ||| |||||||| || |||||| ||| || ||||| || || || || || || | || Sbjct 93468 CTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGC 93527 Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 || || || |||| ||| | |||||||| |||||||| | ||||| | ||||| Sbjct 93528 CGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAAT 93587 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 ||| || || ||||||| |||| | || ||||||||||| |||||||| ||||||||||| Sbjct 93588 CTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCC 93647 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 ||||||||||||||||| || || |||||||| || || || || ||||| ||||| || Sbjct 93648 GTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGG 93707 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 ||| ||||| || ||| || |||| || || |||||| | || || ||| || Sbjct 93708 TTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGG 93767 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 ||||| ||| ||||| ||||| || || |||||||| || || || || || |||||||| Sbjct 93768 TTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGG 93827 Query 182513 TCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 182572 ||| |||||||||||||| || || || |||||||||||| | ||||| ||| | || Sbjct 93828 TCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGC 93887 Query 182573 TGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAA 182632 ||| ||||| || || || |||||||| ||||| | || | ||| ||||| ||||| Sbjct 93888 TGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAA 93947 Query 182633 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACAC 182692 ||| |||||||||||||| ||||| ||| | ||||| | ||||| |||||| | ||||| Sbjct 93948 CCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACAC 94007 Query 182693 TTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 182752 ||||| || | | ||||| || ||||||||||| ||||||||||| |||||||| Sbjct 94008 ATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGC 94067 Query 182753 ACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 ||||||||||| |||||||| ||| | | ||| Sbjct 94068 TCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 352 bits (390), Expect = 3e-92 Identities = 677/992 (68%), Gaps = 6/992 (1%) Strand=Plus/Plus Query 183211 GATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 183270 || || |||| || ||||| ||||||| || |||||||| ||| ||| | | Sbjct 33926 GACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCTCT 33985 Query 183271 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCT 183330 ||||||||| | || || ||| ||| ||| || |||| || || ||| | ||| Sbjct 33986 CCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGGCT 34045 Query 183331 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 183390 |||||||| || ||| |||| |||||| | |||| || || || || || Sbjct 34046 AGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACAGC 34105 Query 183391 ATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAAC-GCTG 183449 | ||||| | | ||| ||||||||||| ||| | ||||| || ||||| | | || Sbjct 34106 CCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGA-TTTCACCCGTTG 34164 Query 183450 GTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGG 183509 ||||||| | || || || |||| || || || ||||| ||||| |||| | | || || Sbjct 34165 GTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGG 34224 Query 183510 TTTCATGCTTCGACAGTTTGAACTTGCTCGCT-TGATTGGTATC-CGTCCTTACAATGCT 183567 | ||| | || || | ||||| ||||| | || || ||| ||||| || || || Sbjct 34225 TCCTATGTTGCGCCAATCCGAACTCGCTCGATCTG--TGCAATCGCGTCCGTATAACGCA 34282 Query 183568 ATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGT 183627 || ||||| || | ||| || || |||| ||| |||| | | ||| |||| |||| Sbjct 34283 ATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGGC 34342 Query 183628 CAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTG 183687 ||||| |||| | ||||| || | ||| |||||||| ||||| ||| | | | Sbjct 34343 CAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCTC 34402 Query 183688 TTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGT 183747 ||| ||||||| |||| || ||||| | ||||| || |||||||||||||||||||| Sbjct 34403 CTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCTGGA 34462 Query 183748 ATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTAT 183807 ||| || | || | | |||||| || || | || || ||||||||| ||| Sbjct 34463 GTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTGTTC 34522 Query 183808 GAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACG 183867 || ||||| || || || |||||| || | || | || ||| |||||||| Sbjct 34523 GAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACT 34582 Query 183868 TATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAAT 183927 ||||| |||||||| || ||||| || ||||| |||| | ||| ||||| ||| Sbjct 34583 TATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAAC 34642 Query 183928 AAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCT 183987 || ||| ||| |||||| ||||| || || || |||| ||| || | | || Sbjct 34643 AAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCT 34702 Query 183988 ATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATC 184047 ||||| | |||| || || | ||||| || || ||||| || || || ||| | Sbjct 34703 ATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTG 34762 Query 184048 AGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAA 184107 | |||||||||||||| || || || || ||||||||||| || || ||||| Sbjct 34763 CGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAG 34822 Query 184108 GGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAG 184167 || | ||||| ||| | ||| || ||||| || ||||| || | |||| || ||| Sbjct 34823 GGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAG 34882 Query 184168 GAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||| |||| | || || ||||||||||| Sbjct 34883 GAGGTTCTACCCCGTGGAAACGCTCTTTGATG 34914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611690204180400