Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq758 650 0.0 >seq758 Length=186484 Score = 650 bits (720), Expect = 0.0 Identities = 742/991 (75%), Gaps = 14/991 (1%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||||| ||| | || |||| | || || ||||| | || ||||||||||| || Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 164824 ATGATCCC----CTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTG 164878 |||||||| ||||| || || || | || || |||||||| || ||||| | Sbjct 93169 ATGATCCCGACCCTGTTAACT----GCAACC-TCCGTATTCATTACTGCTTTTATCGCAG 93223 Query 164879 CTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTA 164938 |||| || || || ||||| |||||||| || || || | |||||||| || ||||| | Sbjct 93224 CTCCGCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGA 93283 Query 164939 ACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATC 164998 |||| || |||||||||||| | | || | || ||| ||||| | |||||||| | Sbjct 93284 ACAATATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACC 93343 Query 164999 CTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGG 165058 | ||||||||||| ||| | || ||||||||| | |||||||| ||||| ||| | | Sbjct 93344 CCATTTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAA 93403 Query 165059 TTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTT 165118 | || | |||||||| | || |||||||||||||||||||||||||||||||| | Sbjct 93404 TCGTTCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCT 93463 Query 165119 ACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTG 165178 |||| | |||||||| |||||||| || || || || ||||| || || || Sbjct 93464 TCCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCA 93523 Query 165179 CCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTG 165238 |||| ||||| || |||| ||| | |||||||| || ||||| || ||||||||| | | Sbjct 93524 CCGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAG 93583 Query 165239 GTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGC 165298 | |||||||| || || |||| |||| |||| |||||||| ||||| ||||| ||||||| Sbjct 93584 GAATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGC 93643 Query 165299 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 165358 |||||||||||||| | || || ||||| |||||||| |||||||| ||| |||||||| Sbjct 93644 ATCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGC 93703 Query 165359 ATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AA 165416 |||| | || ||||| || |||| || || |||| | | || || | || Sbjct 93704 ATGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTG--AGAATGAATCCGCTAA 93761 Query 165417 CTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTA 165476 | ||||| | |||||| || ||||| || || |||||||| || ||||| ||||| || Sbjct 93762 CGCGGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTA 93821 Query 165477 CTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTT 165536 ||||||||| | || |||||||| || ||| || || |||||||| || ||||| || Sbjct 93822 CTTCGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTT 93881 Query 165537 CCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGC 165596 | | || || ||||| ||||| ||||||||||| || ||| | || | ||||| ||||| Sbjct 93882 CTTGGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGC 93941 Query 165597 ATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCAT 165656 |||||||| |||||||||||||| ||||| || | |||||||| ||| |||| Sbjct 93942 TTTCAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCAT 94001 Query 165657 CCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCG 165716 || ||||| ||| || | ||||| || || |||||||| ||||||||||| || Sbjct 94002 AAACACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACG 94061 Query 165717 TAACGCTCACAACTTCCCCCTCGACCTCGCT 165747 |||||||||||||||||| || || || ||| Sbjct 94062 TAACGCTCACAACTTCCCTCTAGATCTGGCT 94092 Score = 349 bits (386), Expect = 4e-91 Identities = 675/989 (68%), Gaps = 8/989 (1%) Strand=Plus/Plus Query 166189 GAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 166248 |||| ||||| | || || ||| ||||||| || |||||||| ||| ||| | Sbjct 33924 GAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCT 33983 Query 166249 CTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCG 166308 || ||||||||| |||| || || |||| ||||| |||| ||||| ||| | | Sbjct 33984 CTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGG 34043 Query 166309 CAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC--AGA 166366 | || |||| ||||||| |||| |||||| | || | || || || || | | Sbjct 34044 CTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACA 34103 Query 166367 TGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAG 166426 | | | ||||| | | | || |||||||| ||||| ||||| |||||| | | Sbjct 34104 GCCCA--GCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCG 34161 Query 166427 GTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAAT 166486 ||||||||| | || || || ||| |||| || || ||||| |||||||||| | || Sbjct 34162 TTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGAT 34221 Query 166487 TGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATT-CGTCCGTACAAT 166544 ||| ||| | || || | ||| ||||||| ||| || | || |||||||| || Sbjct 34222 GGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCT-GT-GCAATCGCGTCCGTATAAC 34279 Query 166545 GCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTG 166604 |||||||| ||||| | ||| || || || | ||| || | | ||| | || || Sbjct 34280 GCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTG 34339 Query 166605 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTC 166664 || || || || |||||| ||| || | ||| || |||| |||||||||| | || Sbjct 34340 GGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATC 34399 Query 166665 CTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCA 166724 || ||| ||| || |||| || ||||| || ||||| |||||||||||||| || || Sbjct 34400 CTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCT 34459 Query 166725 GGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTG 166784 || | | |||| ||| | ||| | || || | || || ||||| || ||| Sbjct 34460 GGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTG 34519 Query 166785 TATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAA 166844 | | |||||||| || ||||| ||| || | | | | || ||| ||||| Sbjct 34520 TTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAG 34579 Query 166845 ACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGT 166904 || ||||| |||||||| || || |||| |||||| || | | |||| |||| Sbjct 34580 ACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCC 34639 Query 166905 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGT 166964 || || | ||| || ||| ||| | || || || || | ||| ||| ||| Sbjct 34640 AACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGT 34699 Query 166965 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAA 167024 | || || | ||||||| || | || || || || |||||||| || ||||| || Sbjct 34700 GCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAG 34759 Query 167025 CTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAAT 167084 | | |||||||| ||||| ||||| ||||| || || ||||| ||||| | |||| Sbjct 34760 GTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAAT 34819 Query 167085 GAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCT 167144 |||||||| ||| ||||||||||| || ||||| |||||||| | |||||||||| Sbjct 34820 GAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCC 34879 Query 167145 GAAGAGGTTCTTCCTAGAGGTAACGCTCT 167173 || |||||||| || | || |||||||| Sbjct 34880 GAGGAGGTTCTACCCCGTGGAAACGCTCT 34908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563655459313920