Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq758 618 5e-172 >seq758 Length=186484 Score = 618 bits (684), Expect = 5e-172 Identities = 736/993 (74%), Gaps = 4/993 (0%) Strand=Plus/Minus Query 83966 AACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACC 84025 ||| || || ||||| | |||||||| || ||||||||||| ||||| || |||||||| Sbjct 94098 AACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATACC 94039 Query 84026 AAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085 ||| ||| || || | | |||||||| || || | ||||| |||||||| || Sbjct 94038 AAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCAAC 93979 Query 84086 AAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGC 84145 | || || ||||| || || || || || || ||||| ||||| | |||| ||| Sbjct 93978 TACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAAGC 93919 Query 84146 AGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATT 84205 | |||||| || || || |||||||||||||||||||||||||| || ||||| || Sbjct 93918 GGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAGTT 93859 Query 84206 GTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATT 84265 || ||| |||||| |||||||| | ||||||||||| ||||||||||| ||||| || Sbjct 93858 ATTAAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATGTT 93799 Query 84266 ATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGT 84325 ||| ||||||||||| ||||| ||| ||||||| ||| || |||| || || || Sbjct 93798 ATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTGGT 93739 Query 84326 TTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACC 84385 ||| ||||| || |||||| || | ||||||||||| ||| |||||||| ||| || Sbjct 93738 TTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCGCC 93679 Query 84386 GAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTG 84445 |||||| ||||| || ||||||||||| || ||||||||||||||||| ||||| || || Sbjct 93678 GAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCTTG 93619 Query 84446 GAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGA 84505 ||| || | ||| ||||||| || || ||||| || | ||||| || || ||||| Sbjct 93618 GAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAGCT 93559 Query 84506 ACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTA 84565 ||||| || | ||| || | | || || || | || |||||||| || || ||||| Sbjct 93558 TCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAGTA 93499 Query 84566 AGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCAT 84625 |||||| |||||| || |||||||| | || | ||||||||| ||||||||||| Sbjct 93498 CGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCCAT 93439 Query 84626 GTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTAT 84684 ||| |||| | | |||| ||||||||||| || | |||| || || || || || | Sbjct 93438 GTA-GCAAGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTGT 93380 Query 84685 ATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCAT 84744 |||||||||| || ||| ||| ||||||||||| || ||||| || | ||| ||||| Sbjct 93379 ATAGCCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCGG 93320 Query 84745 TAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGA 84804 |||| || | | |||||||| || || ||||| ||||| || |||||||||| | Sbjct 93319 CGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAGAAA 93260 Query 84805 CTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-A 84863 | ||||| || |||||||||||||| ||||| || || | | || ||| | ||||| | Sbjct 93259 CGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAATA 93200 Query 84864 CAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATA 84923 | || || |||| | || || || ||||| || || ||||| |||| || | Sbjct 93199 CGGA-GGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAAGG 93141 Query 84924 CGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 || || | ||| ||||| |||||| |||||| Sbjct 93140 CGATTTTCGGTGCTGGTGATCCAATCGCAGAAG 93108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571268187182640