Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq758 531 2e-146 >seq758 Length=186484 Score = 531 bits (588), Expect = 2e-146 Identities = 711/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 || || || || ||||||||||| |||||||| ||||||||||| ||||| || | || | Sbjct 94091 GCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATACCAAGGTTG 94032 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 || ||||| | |||||| ||||| || | ||| | ||| | | |||||| || || Sbjct 94031 GCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCAACTACGGAT 93972 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || || ||||| || ||||| || || |||||||| ||| | |||| |||||||| | Sbjct 93971 TGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAAGCGGTAAAC 93912 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || ||||||||||||| ||| || |||| ||| ||||||||| Sbjct 93911 CAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAGTTATTAAAG 93852 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 |||||||| |||||||| | || || ||||| || ||||| || ||||||||||| || Sbjct 93851 CTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATGTTATATGTT 93792 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 || ||||| || || || | || || ||| |||||| | |||| ||||| || Sbjct 93791 TCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTGGTTTCCCGG 93732 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || || ||||| || | || ||||||||| ||||| || ||| |||||||| Sbjct 93731 ATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCGCCGAATACG 93672 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || || ||||| | ||| |||||||||||||||||||| |||||||| || || || || Sbjct 93671 CCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCTTGGAACACG 93612 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | |||||| ||||| || || || || || | ||||||||| || ||||| || ||||| Sbjct 93611 ATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAGCTTCCTTGA 93552 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 |||| |||||||| || || || || || ||||||||||||||||| || || ||| Sbjct 93551 CCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAGTACGCAACA 93492 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | |||||| | | | ||||||||||| | || |||| ||| || Sbjct 93491 GCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCCATGTA-GCA 93433 Query 36633 GAGATAC--CAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 36690 || ||| ||| || ||||| | || || |||| || || || ||||| |||| || Sbjct 93432 -AGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTGTATAGCC 93374 Query 36691 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATG 36750 | || || | | ||| |||||||| || ||||||||||| | |||||| ||| || | Sbjct 93373 ATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCGGCGGAGG 93314 Query 36751 ATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT 36810 |||| || || |||||||| || ||||| || || | | | || || || |||| Sbjct 93313 TGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAGAAACGGGCT 93254 Query 36811 CACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCA 36870 | |||||||| || ||||| || || || || || | ||| ||| | | ||| | | Sbjct 93253 CGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAATACGGAGG 93194 Query 36871 CTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGT 36930 ||| ||||| || | |||||||| ||||| || |||||||| | || ||||| || | Sbjct 93193 TTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAAGGCGATTTT 93134 Query 36931 TTGTACTTGTAACCCAGTCACATAA 36955 || || || | ||| || || || Sbjct 93133 CGGTGCTGGTGATCCAATCGCAGAA 93109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150453045722332