Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq758 544 2e-150 >seq758 Length=186484 Score = 544 bits (602), Expect = 2e-150 Identities = 713/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 || ||||| || |||||||||||||| || ||||| ||||| || ||||||||||||||| Sbjct 94091 GCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATACCAAGGTTG 94032 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 || ||||| | | || ||||| ||| | || | || |||| ||||| || Sbjct 94031 GCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTA---TCAACTACG 93975 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || || ||||| || ||||| || || |||||||| ||| || |||| || |||| Sbjct 93974 GATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAAGCGGTA 93915 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||||| ||| || |||| |||| || ||| Sbjct 93914 AACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAGTTATTA 93855 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 ||||||||||| |||||||| | || || ||||| || ||||| || ||||||||||| Sbjct 93854 AAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATGTTATAT 93795 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 ||||| || || || || || | || || ||| || | | |||| ||||| Sbjct 93794 GTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTGGTTTCC 93735 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 || || || |||||| || | |||||||||||| ||| | || ||| |||||| Sbjct 93734 CGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCGCCGAAT 93675 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||||| | |||||||||||||||||||||||| |||||||| || ||||| Sbjct 93674 ACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCTTGGAAC 93615 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 |||| ||||||||| || || |||||||| || | ||||||||| || ||| ||||| Sbjct 93614 ACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAGCTTCCT 93555 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 || || | |||||| | ||||| || | | ||| || ||||| || ||||| || || Sbjct 93554 TGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAGTACGCA 93495 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || ||||| || ||||| || || | | | ||||||||||| | || |||| ||| Sbjct 93494 ACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCCATGTAG 93435 Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 || | |||| |||||||| | |||| |||| ||| || || || ||||| ||| Sbjct 93434 CAAGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTGTATAGC 93375 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 |||||||| | | || |||||||| ||||| |||||||| || || || ||| |||| Sbjct 93374 CATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCGGCGGAG 93315 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 |||| | || || || || || || ||||| || || | ||||| || | ||||| Sbjct 93314 GTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAGAAACGGGC 93255 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 || || || ||||| || || ||||| || || || | || || || ||| | | Sbjct 93254 TCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAATACGGAG 93195 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| ||||| || | || ||||| | ||||| |||||||| | || ||||| || Sbjct 93194 GTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAAGGCGATTT 93135 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | |||||| || | ||| || ||||| Sbjct 93134 TCGGTGCTGGTGATCCAATCGCAGAA 93109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648225962788