Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq758 520 3e-143 >seq758 Length=186484 Score = 520 bits (576), Expect = 3e-143 Identities = 704/980 (72%), Gaps = 6/980 (1%) Strand=Plus/Minus Query 25459 TCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGG 25518 || |||||||||||||| |||||||| ||||||||||| ||||| || | || ||| ||| Sbjct 94085 TCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATACCAAGGTTGGCGCGG 94026 Query 25519 TTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTG 25578 || | |||||| ||||| || | ||| | ||| | | |||||| || || || || Sbjct 94025 TTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCAACTACGGATTGGTTA 93966 Query 25579 AAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATG 25638 ||||| || ||||| || || |||||||| ||| | |||| |||||||| ||| || Sbjct 93965 AAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAAGCGGTAAACCAGATA 93906 Query 25639 CAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCA 25698 | || ||||||||||||| ||| || |||| |||| ||||||||||||||| Sbjct 93905 CCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAGTTATTAAAGCTAGCA 93846 Query 25699 TACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCT 25758 || |||||||| | || || ||||| || ||||| || ||||||||||| || || ||| Sbjct 93845 TATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATGTTATATGTTTCCTCT 93786 Query 25759 TCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGT 25818 || || || || | || || ||| |||||| | |||| ||||| || || || Sbjct 93785 TCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTGGTTTCCCGGATCAGG 93726 Query 25819 GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCA 25878 ||||| || | || ||||||||| ||||| || ||| |||||||| || || Sbjct 93725 CTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCGCCGAATACGCCAGCC 93666 Query 25879 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATA 25938 ||||| | ||| |||||||||||||||||||| |||||||| || || || || | |||| Sbjct 93665 ACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCTTGGAACACGATCATA 93606 Query 25939 AAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 25998 || ||||| || || || || || | ||||||||| || ||||| || ||||| |||| | Sbjct 93605 AAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAGCTTCCTTGACCAATA 93546 Query 25999 GGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATC 26058 ||||||| || || || || || ||||||||||||||||| || || ||| ||| Sbjct 93545 GGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAGTACGCAACAGCGATC 93486 Query 26059 CACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAG 26115 || || | ||| || | | | ||||||||||| | || |||| || ||||| Sbjct 93485 CAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCCATGTAGCAAGCT--- 93429 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 | || | || ||||| | || || |||| || || || ||||| || | ||| || Sbjct 93428 ACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTGTATAGCCATTCA 93369 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || | | ||| |||||||| || ||||||||||| | |||||| ||| || | ||| Sbjct 93368 TCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCGGCGGAGGTGGGG 93309 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || || || ||||| || ||||| || || | | | || || || ||||| ||| Sbjct 93308 ATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAGAAACGGGCTCGCGA 93249 Query 26296 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 26355 ||||| || ||||| || || || || || | ||| ||| | | ||| | | ||| Sbjct 93248 ATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAATACGGAGGTTGCA 93189 Query 26356 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 26415 ||||| || | |||||||| ||||| || |||||||| | || ||||| || | || Sbjct 93188 GTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAAGGCGATTTTCGGTG 93129 Query 26416 CTTGTAACCCAGTCACATAA 26435 || || | ||| || || || Sbjct 93128 CTGGTGATCCAATCGCAGAA 93109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151992231867608