Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 3e-15 seq59 93.3 3e-14 seq24 93.3 3e-14 seq125 91.5 1e-13 seq2 91.5 1e-13 seq44 89.7 4e-13 seq317 86.0 5e-12 seq147 86.0 5e-12 seq145 86.0 5e-12 >seq32 Length=1846953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| | || ||| ||||| || |||||||| | || | || Sbjct 247268 AGGCGCAGCACCAGATGCAAGGTCGACTCCTTTTGGATGTTGTAATCCGCGAGCGTGCGC 247209 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| |||||| || |||| |||| |||||| Sbjct 247208 CCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGAATTCCCTCC 247149 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | || || ||| ||||| | ||| Sbjct 247148 TTATCCTGGATCTTCGACTTAACATTATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTG 247089 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||||| || || || | ||| || ||||| ||||||||||| Sbjct 247088 ATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCGT 247048 >seq59 Length=1263218 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| | || ||| || || || |||||||| | || | || Sbjct 503357 AGGCGCAGCACCAGATGCAAGGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGC 503416 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| |||||| || |||| |||| |||||| Sbjct 503417 CCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGAATTCCCTCC 503476 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | || || ||| ||||| | ||| Sbjct 503477 TTATCCTGGATCTTCGACTTAACATTATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTG 503536 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||||| || || || | ||| || ||||| ||||||||||| Sbjct 503537 ATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCGT 503577 >seq24 Length=2034879 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| | || ||| || || || |||||||| | || | || Sbjct 498453 AGGCGCAGCACCAGATGCAAGGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGC 498394 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| |||||| || |||| |||| |||||| Sbjct 498393 CCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGAATTCCCTCC 498334 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | || || ||| ||||| | ||| Sbjct 498333 TTATCCTGGATCTTCGACTTAACATTATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTG 498274 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||||| || || || | ||| || ||||| ||||||||||| Sbjct 498273 ATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCGT 498233 >seq125 Length=444406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||||||| || | ||| || || ||| || || || ||||| || | Sbjct 271055 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 270996 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || || || || |||||||| || |||| |||| Sbjct 270995 AGCGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 270936 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || ||||||| Sbjct 270935 ATTCCCTCCTTGTCCTGGATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACC 270876 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || ||||| || || |||| ||||| ||||| ||||||||||| Sbjct 270875 TCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGT 270826 >seq2 Length=6181961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| || | ||| |||| | || || | |||||| || ||||| Sbjct 4454877 CTCCTTTTGGATGTTGTAGTCCGCGAGAGTTCGTCCATCCTCGAGCTGCTTTCCAGCAAA 4454818 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| || |||| ||| | |||||||||||| ||||| || ||| Sbjct 4454817 GATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTGACATT 4454758 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||| | |||||| || || || |||| || || || Sbjct 4454757 ATCGATGGTGTCCGAGCTCTCCACCTCAAGCGTAATTGTCTTGCCAGTCAGGGTCTTGAC 4454698 Query 48755 AAAAATCTGCATC 48767 || ||||||||| Sbjct 4454697 GAAGATCTGCATC 4454685 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || ||||| || || || || ||||| || | Sbjct 4455140 CCTCCACGTAGACGGAGCACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 4455081 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGG 48658 ||| |||| | || || | |||||| || ||||| || || ||||| || |||| |||| Sbjct 4455080 AGAGTTCGTCCATCCTCGAGCTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCCGGTGGG 4455021 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||||||||| |||||| || || | | | || || |||||| Sbjct 4455020 ATC-CCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCCGAGCTCTCCAC 4454962 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | ||| || || || || |||| || || || || ||||||||| Sbjct 4454961 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATC 4454913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || ||||| || || || || ||||| || | Sbjct 4455368 CCTCCACGTAGACGGAGCACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 4455309 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGG 48658 ||| |||| | || || | |||||| || ||||| || || ||||| || |||| |||| Sbjct 4455308 AGAGTTCGTCCATCCTCGAGCTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCCGGTGGG 4455249 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||||||||| |||||| || || | | | || || |||||| Sbjct 4455248 ATC-CCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCCGAGCTCTCCAC 4455190 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | ||| || || || || |||| || || || || ||||||||| Sbjct 4455189 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATCTGCATC 4455141 >seq44 Length=1658729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || || ||||| | ||| | || | || || | |||||| |||||||| Sbjct 1443428 CTCTTTCTGGATGTTATAATCTGCCAGAGTACGCCCATCCTCGAGCTGCTTCCCGGCAAA 1443487 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||| || ||||| || |||| |||| ||| |||||||| ||||| || ||| Sbjct 1443488 TATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACATT 1443547 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || ||||| || || || Sbjct 1443548 GTCGATCGTGTCCGAGCTCTCCACCTCCAGAGTGATCGTCTTGCCTGTCAAGGTCTTAAC 1443607 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 1443608 GAAGATCTGCAT 1443619 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||||||| || | ||| ||||| || || || || ||||| || | || | || Sbjct 1443630 AGCCGCAAAACAAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCTAATGTCCGG 1443689 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || |||||||| || |||| |||| |||||| Sbjct 1443690 CCATCCTCGAGCTGCTTCCCGGCGAAGATAAGTCGCTGCTGGTCCGGTGGAATCCCCTCC 1443749 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || || ||||||||||| || Sbjct 1443750 TTGTCCTGGATCTTAGTCTTCACGTTGTCAATAGTGTCCGAGCTCTCCACCTCCAGAGTG 1443809 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || | || || ||||| ||||||||| Sbjct 1443810 ATCGTCTTCCCTGTGAGTGTCTTGACAAAGATCTGCATC 1443848 >seq317 Length=11171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||||||| || | ||| || || ||| || || || ||||| || | Sbjct 9822 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 9763 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | |||| || | ||||||||| ||||| || || ||||| || |||| ||| Sbjct 9762 AAGGTCCTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGA 9703 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| || ||| | | | || || ||||||| Sbjct 9702 ATCCCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACC 9643 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || ||||| || || |||| ||||| ||||| ||||||||||| Sbjct 9642 TCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGT 9593 >seq147 Length=303747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||||||| || | ||| || || ||| || || || ||||| || | Sbjct 247238 CCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 247179 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | |||| || | ||||||||| ||||| || || ||||| || |||| ||| Sbjct 247178 AAGGTCCTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGA 247119 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| || ||| | | | || || ||||||| Sbjct 247118 ATCCCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACC 247059 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || ||||| || || |||| ||||| ||||| ||||||||||| Sbjct 247058 TCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGT 247009 >seq145 Length=315748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || || ||||| | ||| | || | || || | |||||| |||||||| Sbjct 114949 CTCTTTCTGGATGTTATAATCTGCCAGAGTACGCCCATCCTCGAGCTGCTTCCCGGCAAA 114890 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| |||| ||| |||||||| ||||| || ||| Sbjct 114889 GATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACATT 114830 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || ||||| || || || Sbjct 114829 GTCGATCGTGTCCGAGCTCTCCACCTCCAGAGTGATCGTCTTGCCTGTCAAGGTCTTGAC 114770 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 114769 GAAGATCTGCAT 114758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934080850834