Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq758 542 3e-149 >seq758 Length=186484 Score = 542 bits (600), Expect = 3e-149 Identities = 708/973 (73%), Gaps = 10/973 (1%) Strand=Plus/Plus Query 162523 GACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCA 162582 || |||||| | || | || ||||||||||| |||||||||| | || | | | Sbjct 93133 GAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTT---AACT 93189 Query 162583 GCAACTTGC---TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATC 162639 ||||| | | ||||| | ||| || || ||||| || ||||| ||||| || ||||| Sbjct 93190 GCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTATT 93249 Query 162640 AGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTT 162699 | || || ||| | ||||| ||| | || || ||||| || |||||||||||| | | Sbjct 93250 CGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTATC 93309 Query 162700 CCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGAT 162759 || | || ||||| ||| | |||||||| || || |||||||| ||| || ||||| Sbjct 93310 CCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGAT 93369 Query 162760 GAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATC 162819 || ||| | || || || || || | | |||| | || | |||||||| | ||| | Sbjct 93370 GAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGTA 93429 Query 162820 ACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATC 162879 | ||| |||||| ||||||||||| | |||||| |||||||| ||||||||| Sbjct 93430 GCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGATC 93489 Query 162880 TGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTC 162939 |||||| ||||| || || || | || || ||| || || ||| |||| ||| | Sbjct 93490 GCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTATT 93549 Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 |||||||| ||||| |||| |||||| | || || ||||| || || |||| ||| Sbjct 93550 GGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTATG 93609 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA 163059 ||||||||||||| || ||||||||||| ||||| || ||||| ||| | || || || Sbjct 93610 ATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGGCT 93669 Query 163060 GGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTT 163119 || |||||||| || || || || ||||||||||| ||||| | || |||||| || Sbjct 93670 GGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCCTG 93729 Query 163120 ATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAA 163179 ||| | ||||| |||||| | || || ||| ||||| | ||| || || ||||| Sbjct 93730 ATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAGAG 93789 Query 163180 GAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC- 163238 || || || |||||||| |||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 93790 GAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATGCT 93849 Query 163239 ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCAT 163298 | |||| || ||||| ||||| || ||||| ||| | ||||| | || || || | || Sbjct 93850 AGCTTT-AATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTAT 93908 Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAA 163358 |||||| || || |||| | || ||||| |||||||| |||||||||||||| || Sbjct 93909 CTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTAA 93968 Query 163359 CCAATCCGTCGTTGA-CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACA 163417 ||||||||| ||||| || | || || || || ||||| || || | ||| Sbjct 93969 CCAATCCGTAGTTGATAGCCAG-GGACGTGTCATAAACACATGGGCCGACATTATCAACC 94027 Query 163418 GAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACC 163477 | || ||||||||||| |||||||| || ||||| |||||||||||||| || || | Sbjct 94028 GCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGATC 94087 Query 163478 TTGCTGCTGCTGA 163490 | ||| | | ||| Sbjct 94088 TGGCTTCCGTTGA 94100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553079559521520