Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq758 659 0.0 >seq758 Length=186484 Score = 659 bits (730), Expect = 0.0 Identities = 747/995 (75%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||||| ||| | || ||| | || ||||| || | || |||||||| |||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || ||||| | ||||| || || ||||| || || |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || |||||||| || || |||||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || | || | ||| ||| || ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| ||||| ||||||| ||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 163191 CTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAATGGGAACTTTCATAT 163248 |||||||||| | || | || ||| || ||||| ||||| ||||||||| | Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTC 93465 Query 163249 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 163308 ||||| ||||||||||| |||||| ||| || ||||| || ||||||||||| || || Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 163309 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGC 163368 || || || || |||| ||| | |||||||| ||||| |||| ||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 ||||||||||| ||||||| ||| | || |||||||| || ||||||||||| ||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 || ||||| |||||||| || ||||| || ||||| ||||| || ||| || |||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 163489 GGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTAT 163548 || | || || ||| || |||| || || ||||| | ||| || ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 163608 ||||||| ||||||||| ||||| || ||||| ||||| || || || || || |||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTG 163668 ||||| ||||||||||||||||| || || ||| | | || ||||| ||| || Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTG 93885 Query 163669 GCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTC 163728 || || ||||| || || || ||||||||||| || ||||| ||||||| ||||| ||| Sbjct 93886 GCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTC 93945 Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 ||||| |||||||||||||| ||||| ||| | ||||| | ||||| ||||| | ||| Sbjct 93946 AACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAAC 94005 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 163848 || ||||| ||| | | |||||||| || |||||||| ||||||||||| |||||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAAC 94065 Query 163849 GCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 || ||||||||||| || ||||| ||| | | ||| Sbjct 94066 GCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 304 bits (336), Expect = 1e-77 Identities = 673/1007 (67%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 |||||| ||| | |||| || |||| || ||||| ||||||| || |||||| Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | | ||||||||| | || || ||| ||| |||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 ||||| || || | ||| |||||||| || ||| |||| ||| || | |||| Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || || || | | ||||| | | | ||||||||||| ||| | || Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || ||||| || ||||||||| | || || ||||||| ||||| || ||||| ||| Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATC 164978 || || | | || ||| ||| | ||||| | || || || || || || ||| Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGA-TCTGTGCAATC 34266 Query 164979 -CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 ||||| || || || || ||||| || | ||| || || |||| ||| ||| | | | Sbjct 34267 GCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTT 34326 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 ||| | || |||| |||||| || |||||| ||| || || || || ||||| || Sbjct 34327 GATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCAT 34386 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||| ||| | | | ||| ||| || |||| || |||||||||||||| || ||||| Sbjct 34387 CTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATAT 34446 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| ||||| || | ||| | || | | ||||| ||| || | || || Sbjct 34447 GATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGT 34506 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 || |||||| | | ||||||||| || || ||||| || || | || |||| Sbjct 34507 GGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGAC 34566 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || |||||||||||||| ||||| ||||| || ||||| ||||| || | | ||| Sbjct 34567 CCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGG 34626 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| | ||||| || || || || |||||| || || || || | || Sbjct 34627 TGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGG 34686 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | ||| ||||||| | ||||||| || | || || || || || || || Sbjct 34687 TTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTT 34746 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| |||||| | | |||||||||||||| || || || || ||||| || || Sbjct 34747 CGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAA 34806 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || || | |||||| || | ||||||||| ||||| || ||||| || |||||||| Sbjct 34807 TATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 34866 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | | | ||||| || || || | || | || ||||| |||| || Sbjct 34867 CCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563204263589040