Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq758 627 9e-175 >seq758 Length=186484 Score = 627 bits (694), Expect = 9e-175 Identities = 731/984 (74%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||||| ||| |||| ||| | |||||| | || | || ||||| || || || Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCT 8367 |||||||| ||||| | | || || |||||||| || || | || ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 8368 CCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAAC 8427 || || || || ||||| || ||||| || ||| |||| ||||| || ||||| ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 8428 ATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATC 8487 || ||||||||||| || | |||| ||| ||| || || | |||||||||||||| Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 8488 TGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTT 8547 |||||||| || ||| ||||||| ||||| |||||||| ||||| ||| | || | ||| Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTT 93408 Query 8548 TTCCACTTCCTCCTTGGCGT-CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 | |||||||| ||||| || |||| || ||||||||||| ||||||||| | ||| Sbjct 93409 CTTCACTTCCTGCTTGGAGTAGCTTGC-TACATGGGTCGTGAGTGGGAACTTAGCTTCCG 93467 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | | || ||||| ||||||||| |||||| ||||| || |||||||| || || | || Sbjct 93468 CTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGC 93527 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 || || | |||| ||| |||||||||| ||||| || ||||||||| | || || Sbjct 93528 CGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAAT 93587 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 ||| || || ||||||| |||| | || ||||| ||||| ||||||||||| ||||| || Sbjct 93588 CTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCC 93647 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||||||| | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 93648 GTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGG 93707 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 ||| | || |||||| ||| | || || ||||| || | || || ||| || Sbjct 93708 TTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGG 93767 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 |||| ||| ||||| ||||||||||| || |||||||| || ||||| || ||||| || Sbjct 93768 TTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGG 93827 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| ||||||||||||||||| ||||| || || | | | || || ||| | || Sbjct 93828 TCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGC 93887 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| ||||| || || || |||||||||||||| | ||| | || ||||||||||| Sbjct 93888 TGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAA 93947 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 ||| || || |||||||| ||||| ||| | | || | || ||||| || | ||||| Sbjct 93948 CCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACAC 94007 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||| ||| | | |||||||| || |||||||| || ||||| ||| | ||||| Sbjct 94008 ATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGC 94067 Query 9207 ACACAACTTCCCGCTTGACCTTGC 9230 ||||||||||| || || || || Sbjct 94068 TCACAACTTCCCTCTAGATCTGGC 94091 Score = 289 bits (320), Expect = 3e-73 Identities = 670/1007 (67%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 |||||| ||| | |||| || |||| || |||||| ||||||| ||| ||| || Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 || ||| ||| | | || || ||| | || || || || | |||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTC 10006 |||||||||||| | || ||| || | |||||| || | ||||| | |||| Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 10007 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 10066 || || || || | | ||||| | | | ||||||||||| ||| | || Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 10067 GGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 10126 ||||||||| ||| ||| ||| | || || || ||| | || || || ||||| || Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 10127 GCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATC 10186 || || | ||| || || |||||| ||||| | || || || ||| | | |||| Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATC 34266 Query 10187 -CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCT 10245 || || || || || ||||||||||| | || || || |||| ||| || | | | Sbjct 34267 GCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTT 34326 Query 10246 CATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGAT 10305 ||| |||| | || ||||| || |||| | || || || | ||| || || || || Sbjct 34327 GATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCAT 34386 Query 10306 TTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATAT 10365 ||||| | | | ||| ||| ||||| | ||||||||||| ||||| || || ||||| Sbjct 34387 CTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATAT 34446 Query 10366 GATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGT 10425 ||||||||||||||| ||| ||| | || | || | || | ||||| | || || Sbjct 34447 GATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGT 34506 Query 10426 AGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCAC 10485 || || ||||| | | ||||| || || || || ||| || | || || Sbjct 34507 GGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGAC 34566 Query 10486 TCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGG 10545 ||| |||||||| ||||| |||||||||||||| || || |||||||| | || || Sbjct 34567 CCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGG 34626 Query 10546 AATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGG 10605 |||| ||| ||||| || || ||| ||| | || ||||| || | || Sbjct 34627 TGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGG 34686 Query 10606 TCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTT 10665 | ||| | |||||||| | ||||||| || | ||||| || || || || || Sbjct 34687 TTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTT 34746 Query 10666 TGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAA 10725 || || || ||| | | || |||||||||| || || || || || || ||||| Sbjct 34747 CGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAA 34806 Query 10726 TATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAG 10785 ||| || ||| || ||| ||||||| ||||||||| | || || || || |||| Sbjct 34807 TATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 34866 Query 10786 CTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGAT 10832 | | || ||||| || || ||||| || | || || || || |||| Sbjct 34867 CCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516475106352000