Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq145 102 5e-16 seq44 95.1 8e-14 seq125 87.8 1e-11 >seq145 Length=315748 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || ||||| || || || || || | ||||| || || | || Sbjct 114523 ACGAAGACGAAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCCAAGGT 114464 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 114463 GCGTCCATCCTCGAGTTGCTTCCCAGCGAAAATAAGTCGCTGCTGGTCCGGAGGAATTCC 114404 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||| || ||||| ||||| |||||||| || | | | | | || | Sbjct 114403 TTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCAATAGTGTCCGAGCTCTCCA-CCTCCA 114345 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| ||||| ||||| ||||| Sbjct 114344 GAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 114305 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || |||| || ||| || || || ||||| ||||| || || ||||| || Sbjct 114252 TTGTAGTCCGCTAAGGTCCTGCCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGC 114193 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||||||||||||||| || ||||| ||||| |||||||| || Sbjct 114192 TGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCAATAGTGTCC 114133 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | || || || || || || |||||||| ||||| ||||| ||||| Sbjct 114132 GAGCTCTCCA-CCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 114077 >seq44 Length=1658729 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| ||||| |||||||| || || || || ||||||||||||||||| Sbjct 1443920 ATCCTCGAGCTGCTTACCAGCGAAAATAAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTT 1443979 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||||| |||||||| || | | | | | || || || | Sbjct 1443980 GTCCTGGATCTTCGTCTTGACGTTGTCAATAGTGTCCGAGCTCTCCA-CCTCCAGAGTGA 1444038 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| ||||| ||||| Sbjct 1444039 TGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 1444072 >seq125 Length=444406 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| || || || || | |||||||| || || || Sbjct 271734 ACGCAGACGAAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAATCCGCCAGGGT 271675 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| || ||||| || ||||| || || || |||||||| || Sbjct 271674 ACGCCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCC 271615 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||| || || || ||||| || ||| || || || || | | | | | | || Sbjct 271614 TTCTTTATCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCCGAGCTCTCCACCTCCA- 271556 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || || |||||||||||||| |||||||| || Sbjct 271555 GGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATCTG 271516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268146685702184