Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq758 688 0.0 seq120 84.2 2e-11 seq88 84.2 2e-11 >seq758 Length=186484 Score = 688 bits (762), Expect = 0.0 Identities = 748/986 (76%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 160885 TGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCC 160944 ||| ||||||||||||| || |||||||| |||| |||||||| || |||||||| || Sbjct 93118 TGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCG 93177 Query 160945 TGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGA 161003 | || | |||| ||| | || ||||| | ||| || | | ||||| || || || Sbjct 93178 ACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGA 93236 Query 161004 CATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTC 161063 || ||||| ||||| || ||||| ||||||| || || || || ||||| || ||||| Sbjct 93237 TATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTC 93296 Query 161064 TGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGC 161123 ||||||| ||||||| | || |||||||||| |||||||||||||||| |||||||| Sbjct 93297 TGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGC 93356 Query 161124 AGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTT 161183 ||| | | || |||||||| |||||||| ||||| | | |||| | || | ||||| Sbjct 93357 GGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTT 93416 Query 161184 CCTGATTG--GCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGA 161241 |||| ||| | | || ||| |||||||||||||||||||||||| | ||| |||| Sbjct 93417 CCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGT 93474 Query 161242 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 161301 ||||| |||||||| || || ||||| || ||||| || || || | || || || Sbjct 93475 ATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTT 93534 Query 161302 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGT 161361 || |||| ||| | |||||||| ||||| || | |||||| | || |||||||| Sbjct 93535 TTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGC 93594 Query 161362 ACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCAT 161421 || ||||||| ||| | || |||||||| || |||||||| || ||||| || ||||| Sbjct 93595 ACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCAC 93654 Query 161422 ATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTG 161481 ||| | || || || || || || ||||| ||||| |||||||| ||||| ||||| || Sbjct 93655 ATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTG 93714 Query 161482 GTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAG 161541 || || ||| ||| | || |||||||| || || || ||| ||| ||||||| | Sbjct 93715 GTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGG 93774 Query 161542 TTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTG 161601 || ||||| ||||| || || || ||||| || ||||| ||||| ||||||||||| || Sbjct 93775 TTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTG 93834 Query 161602 ATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGG 161661 || |||||||| ||| ||| || |||||||| || || ||||| ||| | ||||||||| Sbjct 93835 ATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGG 93894 Query 161662 CCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAAT 161721 || || || || |||||||| || || ||||| ||||||| ||||| |||||||| || Sbjct 93895 CCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAAC 93954 Query 161722 GGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCA 161781 ||||||||||| ||||| || | |||||||| ||||| || || ||||| ||||| Sbjct 93955 GGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACATGGGCC 94014 Query 161782 GACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAAC 161841 ||| || ||||||| || ||||| ||||| || ||||| || || || ||||||||| Sbjct 94015 GACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAAC 94074 Query 161842 TTCCCTCTTGACCTTGCTGCTGCTGA 161867 |||||||| || || ||| | | ||| Sbjct 94075 TTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 336 bits (372), Expect = 2e-87 Identities = 678/996 (68%), Gaps = 10/996 (1%) Strand=Plus/Plus Query 162144 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 162203 ||||||||||| | || || || ||||||| || ||| |||| ||| ||| | Sbjct 33923 AGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTC 33982 Query 162204 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 162263 ||| || |||||| | || || || |||| ||||| |||| ||||||||| | Sbjct 33983 TCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTG 34042 Query 162264 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 162323 || |||||||||| |||||| |||| |||||| | || | || || || || || Sbjct 34043 GCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAAC 34102 Query 162324 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 162383 | ||||| | | | | || |||||||| ||| | ||||| || |||| ||| Sbjct 34103 AGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGT 34162 Query 162384 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 162443 ||||||||| | || || || ||||| || || || ||||| || || |||| | || Sbjct 34163 TGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATG 34222 Query 162444 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTAT-TCGTCCTTACAATGC 162502 ||| ||| | ||||| | ||||| || ||| | | | || ||||| || || || Sbjct 34223 GGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATCGCGTCCGTATAACGC 34281 Query 162503 TATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGG 162562 || || || || | ||| || || || | ||| || | | ||| |||| ||||| Sbjct 34282 AATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGG 34341 Query 162563 ACAATC--GTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 162620 || || ||| |||| | |||||| | ||| || ||||| |||||||||| | | Sbjct 34342 CCAGTCCGGTC--GGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATC 34399 Query 162621 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCA 162680 ||| ||| || || ||||||| ||||| || || || ||||| |||||||| || || Sbjct 34400 CTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCT 34459 Query 162681 GGTATCCTTGGTGGTGCATTGCTCTC-TGCTATTCATGGAGTGACAGTTGAAAATACACT 162739 || | | |||| ||| | | | | ||||| ||| || | || || || |||||||| Sbjct 34460 GGAGTACCGGGTGCTGC-TCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACT 34518 Query 162740 GTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGA 162799 || ||| ||||| || || || || || || | | | || || ||||| Sbjct 34519 GTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGA 34578 Query 162800 AACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAG 162859 || ||||| ||||||||||| || ||||| ||||| || | | |||| |||| Sbjct 34579 GACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCC 34638 Query 162860 TAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCA-TGGGTCTCTGGACAA 162918 ||||| ||| ||| || ||| ||| | || || ||||||| ||| || | ||| | Sbjct 34639 CAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCAC-GGATGA 34697 Query 162919 GTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAG 162978 || |||| || | |||| || || | ||||| || || || ||||| || || || | Sbjct 34698 GTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGG 34757 Query 162979 AAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGA 163038 | || || || |||||||| || ||||| || || || |||||||| ||||| || Sbjct 34758 AGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGA 34817 Query 163039 ATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCC 163098 |||| || |||| || ||| | ||| | ||| || |||||||| ||| | || |||| Sbjct 34818 ATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCC 34877 Query 163099 CTGAAGAGGTCTTGCCAAGAGGCAACGCTCTATGAT 163134 | || ||||| | || | || |||||||| |||| Sbjct 34878 CCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 >seq120 Length=468280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||| ||||||||| ||| |||||| ||| || ||||||||||||| Sbjct 255779 GGGATGTAGCGCAGCTCGGTAGCGCGTTTGTTTTGGGTACAAACGGCCGCAGGTTCGAAT 255720 Query 157751 CCTGTCACCCCGAC 157764 ||||||| ||| || Sbjct 255719 CCTGTCATCCCTAC 255706 >seq88 Length=828699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||| ||||||||| ||| |||||| ||| || ||||||||||||| Sbjct 777663 GGGATGTAGCGCAGCTCGGTAGCGCGTTTGTTTTGGGTACAAACGGCCGCAGGTTCGAAT 777604 Query 157751 CCTGTCACCCCGAC 157764 ||||||| ||| || Sbjct 777603 CCTGTCATCCCTAC 777590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547742010095280