Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq758 518 1e-142 >seq758 Length=186484 Score = 518 bits (574), Expect = 1e-142 Identities = 711/988 (72%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 ||||| | |||||| |||||||| ||||| ||||| || |||||||| || | |||||| Sbjct 94094 GAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATACCAAGG 94035 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 || || | ||||| | ||| |||||||| || ||| |||| | ||| | || | Sbjct 94034 TTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCC-CTGGCTATCAACTAC 93976 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||| |||||||| || || || || |||||||| ||| || |||| || ||| Sbjct 93975 GGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAAGCGGT 93916 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||||||||||||||| || ||||| | | || || Sbjct 93915 AAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAGTTATT 93856 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 |||||||||||| |||||||| | || || ||||| || ||||| || ||||| ||||| Sbjct 93855 AAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATGTTATA 93796 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || || ||||| || ||||| | || || ||| || ||| |||||| ||||| Sbjct 93795 TGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTGGTTTC 93736 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || || ||||| || | || ||||||||| ||||| || ||| ||||| Sbjct 93735 CCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCGCCGAA 93676 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| |||||||||||||||||||| |||||||| |||||||| Sbjct 93675 TACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCTTGGAA 93616 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 |||| ||| || ||||| || || || || | ||||||||| || ||||| || || Sbjct 93615 CACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAGCTTCC 93556 Query 18371 TTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 ||| |||| ||| || | | ||| || | | ||| ||||| || || || || || || Sbjct 93555 TTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAGTACGC 93496 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| ||||| ||||||||||| | | | ||||||||||| | || |||||||| Sbjct 93495 AACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCCATGTA 93436 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 || | || | || ||||| | || || |||| || || || ||||| |||| Sbjct 93435 GCAAGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTGTATAG 93376 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | | ||| |||||||| || ||||||||||| | |||||| ||| || Sbjct 93375 CCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCGGCGGA 93316 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAG-GCTCCTGAGACAG 18669 | |||| || || || || || || ||||| || || | |||| | || || || | Sbjct 93315 GGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATA-TAAGAGAACCAGAAACGG 93257 Query 18670 GCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTG 18729 |||| |||||||| || || || || || ||||| || | ||| ||| | | ||| | | Sbjct 93256 GCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAATACGG 93197 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 | ||| ||||| || | |||||||| ||||| || |||||||| | ||| ||||| | Sbjct 93196 AGGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAAGGCGAT 93137 Query 18790 TGTTTGTACTCGTAACCCAGTCACATAA 18817 | | || || || | ||| || || || Sbjct 93136 TTTCGGTGCTGGTGATCCAATCGCAGAA 93109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317037945252