Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq758 655 0.0 >seq758 Length=186484 Score = 655 bits (726), Expect = 0.0 Identities = 741/996 (74%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 103174 AGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACC 103233 ||| || || || |||||||||||||||||||| || ||||| || |||||||| || Sbjct 94092 AGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATACCAAGGTT 94033 Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 |||||||||| || ||| ||||| ||||| | ||||| ||||| | ||||| | ||| Sbjct 94032 GGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCAACTACGGA 93973 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAA 103353 ||||| |||||||| ||||| |||||||| ||||| ||||| | || | ||||| || Sbjct 93972 TTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAAGCGGTAAA 93913 Query 103354 CCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAA 103413 ||||||||| |||||||| ||||||| || || Sbjct 93912 CCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAGTTATTAAA 93853 Query 103414 TGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGT 103473 || |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| Sbjct 93852 GCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATGTTATATGT 93793 Query 103474 CTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACG 103533 || || || || || ||| ||||||| ||| |||||| | ||||| || || || Sbjct 93792 TTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTGGTTTCCCG 93733 Query 103534 AACCAG-CGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGA 103592 | ||| | || | || |||| ||||| |||||||||||||| || || || ||||| | Sbjct 93732 GATCAGGCTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGAGATCCGCCGAATA 93674 Query 103593 CTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGA 103652 | ||||| || |||| ||||||||| || ||||| || ||||| ||||| |||||||| | Sbjct 93673 CGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCTTGGAACA 93614 Query 103653 CCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTT 103712 | | ||| |||||||||| || || || || ||||||||| | |||||||| |||| Sbjct 93613 CGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAGCTTCCTT 93554 Query 103713 GACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGA 103772 |||||| ||||||| ||| || || |||| || || |||||||| || ||||| || | Sbjct 93553 GACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAGTACGCAA 93494 Query 103773 CACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATG 103832 || |||||| |||||||| |||| ||| || | |||||||||||| ||||| || | Sbjct 93493 CAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCCATGTA-G 93435 Query 103833 CATAGATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAG 103890 || || | | ||| |||||||| | || | |||| | | ||||| ||||| || || Sbjct 93434 CA-AGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTGTATAG 93376 Query 103891 CCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGA 103950 ||| ||||||| |||||| |||||||||||||| |||||||| | ||| || ||| ||| Sbjct 93375 CCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCGGCGGA 93316 Query 103951 GGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGG 104010 || ||| | || ||||||||||| || ||||| ||||| || || ||||||| ||||| Sbjct 93315 GGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAGAAACGGG 93256 Query 104011 TTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGAT 104070 || ||||| ||||| ||||| || || || ||||| | |||||| ||||| | Sbjct 93255 CTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAATACGGA 93196 Query 104071 GGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130 |||||| | ||||| || ||||||||||| ||||||||||| |||| || || || || Sbjct 93195 GGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAAGGCGATT 93136 Query 104131 GTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCA 104166 | || || | ||| ||||||||| | |||| Sbjct 93135 TTCGGTGCTGGTGATCCAATCGCAGAAGCGACCCCA 93100 Score = 309 bits (342), Expect = 4e-79 Identities = 684/1022 (67%), Gaps = 8/1022 (1%) Strand=Plus/Minus Query 101705 ATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTT 101764 |||| |||||||| || | || | ||||| || || ||||| | ||||||||| || | Sbjct 34913 ATCAAAGAGCGTTTCCACGGGGTAGAACCTCCTCGGGGAATACGAGGTTTTCATGAGGCT 34854 Query 101765 GATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGA 101824 |||| | ||||| ||| ||||| | ||| |||||| | || || ||||||||||| Sbjct 34853 GATCCTGAGCTGCCATCCAAGCACGAATACCCTCATTCGACAGAATATTCTTTGTGTAAG 34794 Query 101825 ACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 101884 || |||||||| |||||||||||||| | | ||| ||||| || |||||||| || | Sbjct 34793 GAGTTTCGAACTCGGGATCTTCTGCTGCGCGCACCTCCTGGGAGACGAAGTCATACGCCC 34734 Query 101885 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAA 101944 | || || | || ||||||| | || || | ||| ||| ||| | || || | Sbjct 34733 GCAGATTCGGGGCTAGACCAACTACTCCAATAGCACTCATCCGTGAACCAGTGACGGGTA 34674 Query 101945 CAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAG 102004 | || | ||| ||| || ||| | || || |||| ||| | |||| | Sbjct 34673 CGAATAACATGGGGAAGTGTGACCGACGTTTGTTGGGGGGGGCAACACCGGATGTTTGGG 34614 Query 102005 ACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATG 102064 |||| || || || || |||||||| |||||||||||||| ||| || | || | | | Sbjct 34613 ACCAAAAGCGATTAGCAGTAACCATGGAATAAGTCTCTTCAGATTGGGTCGGATTGGAGG 34554 Query 102065 CTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGT 102124 | ||| || || || ||||||||| || |||| || |||||||| || | |||| Sbjct 34553 CGCGGAATGTATTCGCGCCATCACCATCCTCGAACAGTGTATTCTCCACGGTTGCGCCGT 34494 Query 102125 GGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGT 102184 | | || | | || | ||| | | || ||||| ||||||||||| || |||| Sbjct 34493 GAGTAGCACGTGGGGGAGCAGCACCCGGTACTCCAGCAACTCCCATCATATGAAACGGGT 34434 Query 102185 TGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACAC 102244 |||| ||||| ||||||| ||||| ||| ||| | | ||| || || ||||| |||| Sbjct 34433 TGAGGGTCCAATTATGGAGACCCTGAGGGAGGAGGATGGATCGGAAGATGGCTGCTACAC 34374 Query 102245 CAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGA 102304 | | ||| || | |||| || |||||| || | |||| ||| | | || | Sbjct 34373 CGGAGCTGGGTGCGGAAAACCGACCGGACTGGCCCAACGGATGGATCAAGGATACGGGAA 34314 Query 102305 CAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAAC 102363 || |||| ||||| || | || ||||| || || || |||||||| ||| | | | Sbjct 34313 CAGAAACGGCGATGGGAGCGGAAAACGCGATTGCGTTATACGGACGCGATTGC-ACAGAT 34255 Query 102364 CTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCC 102423 | ||| | ||| |||| || | ||| ||| || | |||| ||||| ||||| || Sbjct 34254 CGAGCGAGTTCGGATTGGCGCAACATAGGACCCATCAAACCAAAAGCACCATGGAGGGCG 34195 Query 102424 ACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGA 102483 || || | ||| || || || | |||| ||| | | |||||||||||| || || ||| Sbjct 34194 ACGAAGGTCCATAGACCACCTAATTGGCACCAACGGGTGAAATCTCCTTGCGCCTCGGGA 34135 Query 102484 CCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTA 102543 |||||||| | | | ||||| | || || || || || |||| | ||| Sbjct 34134 CCCCAAAGCAACGGCGGGGAATGTGCTGGGCTGTTGGCGGGGGTGGATGCAGCGACGGTA 34075 Query 102544 AGGAAATTAGCACCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTA 102600 || | || ||| || | | ||||| || | ||||| || |||| || || Sbjct 34074 AGAGAGTTGCGACCCTCCGGATAGGAACTA---GCCAATCCGTGAGTGTACCGTGAGGTG 34018 Query 102601 GCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGT 102660 || | || || || || | ||| || || | || ||| ||| |||| ||| | Sbjct 34017 ACAGAAGTTGTACCCGTGAACCAACCGCCGGGAGAGAAATAGGCACGAGGAAGAAGCGAT 33958 Query 102661 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCA 102720 || ||||||| |||||| || |||| || |||| | || ||||||| | | ||| Sbjct 33957 AGACCAGACCGACCCACGAATGCAAAACGGTCTCTCCTTGGCCGGTCATCCGTGTTATCA 33898 Query 102721 AA 102722 || Sbjct 33897 AA 33896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633507597458640