Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq758 493 1e-134 seq43 86.0 7e-12 >seq758 Length=186484 Score = 493 bits (546), Expect = 1e-134 Identities = 684/958 (71%), Gaps = 0/958 (0%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| | || || || ||||| ||||||||||| || || | |||||||||||| |||||| Sbjct 94100 TCAACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATA 94041 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | || || ||||||| | || ||| | |||| Sbjct 94040 CCAAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCA 93981 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 || || |||||||||||||||||||| || | |||||| |||||||||| || |||| | Sbjct 93980 ACTACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAA 93921 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | ||| ||||| | || ||| || || || | || | ||| ||||| || | ||| Sbjct 93920 GCGGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAG 93861 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 || || || |||||| |||||||| | ||||| ||||||||||| || ||||| ||| Sbjct 93860 TTATTAAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATG 93801 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 || |||||||| ||||| || || ||| | ||||| ||| || || | ||| || Sbjct 93800 TTATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTG 93741 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| | ||| || ||| || || | ||||||||||| || ||||| |||||| Sbjct 93740 GTTTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCG 93681 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 ||||| | || || || || ||||||||| |||||||| || ||||| || || ||| Sbjct 93680 CCGAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCT 93621 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| |||| |||||||||||| || || ||||| || | |||||||| || ||||| Sbjct 93620 TGGAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAG 93561 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||||| ||||| | || || || ||| || || | || || ||||| Sbjct 93560 CTTCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAG 93501 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 || |||||| ||||||||| ||||| || || | | | |||||||||| | ||| Sbjct 93500 TACGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCC 93441 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 ||||| | | |||| |||||||| | || | | | || ||||| || || Sbjct 93440 ATGTAGCAAGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTTG 93381 Query 124760 TACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCG 124819 || | ||||||||||| || ||| |||||||| || ||||||||||| | ||||||||| Sbjct 93380 TATAGCCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAGCG 93321 Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCT 124879 || | || | || ||||||||||| || ||||| || |||| | |||||| | Sbjct 93320 GCGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAGAA 93261 Query 124880 ACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAA 124939 || || || | || ||||| ||||| || || || ||||| ||||| ||| ||||| Sbjct 93260 ACGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGAAT 93201 Query 124940 CATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 | | ||| || | | | || ||||| || ||||| ||||| |||| |||| Sbjct 93200 ACGGAGGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAA 93143 Score = 205 bits (226), Expect = 1e-47 Identities = 668/1032 (65%), Gaps = 37/1032 (4%) Strand=Plus/Minus Query 122868 AAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGT 122927 |||| ||||| || | |||| || || || |||||||| | || ||||| || || | Sbjct 34910 AAAGAGCGTTTCCACGGGGTAGAACCTCCTCGGGGAATACGAGGTTTTCATGAGGCTGAT 34851 Query 122928 CAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAG 122987 | || || |||||| || | || || ||||| ||||| ||||| || || || Sbjct 34850 CCTGAGCTGCCATCCAAGCACGAATACCCTCATTCGACAGAATATTCTTTGTGTAAGGAG 34791 Query 122988 TCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGA 123047 | |||||||| || ||||||||||| | | ||| || || || ||||| || || | | Sbjct 34790 TTTCGAACTCGGGATCTTCTGCTGCGCGCACCTCCTGGGAGACGAAGTCATACGCCCGCA 34731 Query 123048 GGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAACGA 123107 | || | |||||||| || | || |||| ||| ||| |||| || |||| Sbjct 34730 GATTCGGGGCTAGACCAACTACTCCAATAGCACTCATCCGTGAACCAGTGACGGGTACGA 34671 Query 123108 ACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGACC 123167 | ||||| |||||||| | | |||||| | || | ||| || | || |||| Sbjct 34670 ATAACATGGGGAAGTGTGACCGACGTTTGTTGGGGGGGGCAACACCGGATGTTTGGGACC 34611 Query 123168 AGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGCTC 123227 | || | || || |||| ||| |||||| ||||| || || |||| | | || | Sbjct 34610 AAAAGCGATTAGCAGTAACCATGGAATAAGTCTCTTCAGATTGGGTCGGATTGGAGGCGC 34551 Query 123228 TGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGTGT 123287 ||| || | || || ||| | || || ||| ||| | Sbjct 34550 GGAATGT---------ATTCGCGCCATCACCA------------TCCTCGAACAGTGTAT 34512 Query 123288 TCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACAC 123347 ||| ||| ||||| || ||| | |||| | | || |||| ||| ||| ||||| | Sbjct 34511 TCTCCACGGTTGCGCCGTGAGTAGCACGTGGGGGAGCAGCACCCGGTACTCCAGCAACTC 34452 Query 123348 CCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAAC 123407 ||||||| ||||| || || | || || |||| ||| || || | ||| | | Sbjct 34451 CCATCATATGAAACGGGTTGAGGGTCCAATTATGGAGACCCTGAGGGAGGAGGATGGATC 34392 Query 123408 GAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGAT 123467 | ||||| ||||| |||||| | |||||| | |||| || | ||| || | |||| Sbjct 34391 GGAAGATGGCTGCTACACCGGAGCTGGGTGCGGAAAACCGACCGGACTGGCCCAACGGAT 34332 Query 123468 AGATCAGAAAGATGCTAGTGAAG--ACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 |||| || ||| | | || || ||||| ||| || || |||| |||||| || Sbjct 34331 GGATC--AAGGATACGGGAACAGAAACGGCGATGGGAGCGGAAAACGCGATTGCGTTATA 34274 Query 123526 AGG--TCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGT 123583 || | | ||| ||| || |||| || |||| | | ||| ||| || | Sbjct 34273 CGGACGCGATTGC--ACAGATCGAGCGAGTTCGGATTGGCGCAACATAGGACCCATCAAA 34216 Query 123584 CCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACG 123643 ||||| | ||||| | || || ||| |||||||||| || | ||| ||||||| | Sbjct 34215 CCAAAAGCACCATGGAGGGCGACGAAGGTCCATAGACCACCTAATTGGCACCAACGGGTG 34156 Query 123644 AATGATCCTTGTGCTTCAGGTCCCCAAAGGAAC--ATGAGACTATGACCCATTGC-GTCA 123700 || |||||| || || || |||||||| ||| | || | || | || || Sbjct 34155 AAATCTCCTTGCGCCTCGGGACCCCAAAGCAACGGCGGGGAATGTG---CTGGGCTGTTG 34099 Query 123701 CCAGGTGTGGAGACTGCTGCTGTTAAGA-AGTTTGCTCCCTCAAGATATGAAGATGCAAT 123759 | || ||||| | || | | ||||| |||| ||||| |||| ||| || | Sbjct 34098 GCGGGGGTGGATGCAGC-GACGGTAAGAGAGTTGCGACCCTCCGGATAGGAACTAGCCAA 34040 Query 123760 ACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAG 123819 || || || |||| ||| || || | || || || ||||||||| ||| || | Sbjct 34039 TCCGTGAGTGTACCGTGAGGTGACAGAAGTTGTACCCGTGAACCAACCGCCGGGAGAGAA 33980 Query 123820 ATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTT 123879 ||| |||| ||| ||||| | |||||||||| || | |||| ||||||| |||||| | Sbjct 33979 ATAGGCACGAGGAAGAAGCGATAGACCAGACCGACCCACGAATGCAAAACGGTCTCTCCT 33920 Query 123880 TAACCAGTCGTC 123891 | || ||| || Sbjct 33919 TGGCCGGTCATC 33908 >seq43 Length=1658784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || || ||| |||| || | ||| || ||||| | || || || || Sbjct 1281020 CATGGCCTCGGCAGCAGCGGTTCCTTCGTCGAGTAGCGAAGCGTTGGACATCGGCAAGCC 1281079 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || | ||| | || |||||||||| | | |||||||||||||| | || Sbjct 1281080 CGTGAGCTCGGCGATCATGGTCTGGTAATTGAGAAGCGACTCCAATCTTCCCTGGGCGAT 1281139 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 ||| || || || || ||||| |||||||| | |||||||| Sbjct 1281140 CTCGGCCTGGTAAGGTGTGTACTGCGTGTACCATCCCGGATTCTC 1281184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992913990160