Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq758 607 1e-168 >seq758 Length=186484 Score = 607 bits (672), Expect = 1e-168 Identities = 709/954 (74%), Gaps = 4/954 (0%) Strand=Plus/Minus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| | | ||| ||||| | || || || || ||||| | ||| || || ||||| | Sbjct 94100 TCAACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATA 94041 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| || ||||||| || ||| ||||| ||||| | ||||| ||||| |||| Sbjct 94040 CCAAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCA 93981 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || || |||||||||||||| || ||||||||||| ||| || || | Sbjct 93980 ACTACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAA 93921 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 ||||| |||||||| || || || ||||| ||||| | ||| ||||| | |||||| ||| Sbjct 93920 GCGGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGAG 93861 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 || || || |||||||||||||||||| ||||||||||| || || || || || ||| Sbjct 93860 TTATTAAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAATG 93801 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 || || || || ||||| ||||| ||| | ||||| ||| || ||| | ||||| Sbjct 93800 TTATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGTG 93741 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || || |||| || ||| || |||| || ||||||||| ||| |||||||| Sbjct 93740 GTTTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCCG 93681 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| ||||| | |||||||||||| ||||||||||| |||||||| || Sbjct 93680 CCGAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGCT 93621 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 ||||| || | ||| |||| || || |||||||| || | ||||||| | |||||||| Sbjct 93620 TGGAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAAG 93561 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 |||||||| | ||| |||| | || || || | || || || || || || || Sbjct 93560 CTTCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGAG 93501 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 || || ||| |||||| || |||||||| || || | |||||||||||||| ||| Sbjct 93500 TACGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACCC 93441 Query 27385 ATATAAGCATAG--ATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGT 27442 || | |||| || | || | |||||||| | || | |||| | | ||||| |||| Sbjct 93440 ATGT-AGCA-AGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGT 93383 Query 27443 TATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTG 27502 | || | ||| ||||| | ||||| |||||||| || ||||||||||| | |||||| | Sbjct 93382 TGTATAGCCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAG 93323 Query 27503 CATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAG 27562 | || | |||| || |||||||| || || ||||| || || ||||| ||||||| Sbjct 93322 CGGCGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAG 93263 Query 27563 CAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGA 27622 |||||| || ||||||||||||||||| || || || |||||||| || || ||||| Sbjct 93262 AAACGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGA 93203 Query 27623 AGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAA 27676 | | ||||| | |||||| || ||||||||||||||||||||||| |||| Sbjct 93202 ATACGGAGGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAA 93149 Score = 306 bits (338), Expect = 5e-78 Identities = 626/922 (68%), Gaps = 14/922 (2%) Strand=Plus/Minus Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518 |||||| |||| | || | ||| ||| |||||| || ||||| ||| | | ||| Sbjct 34840 CATCCAAGCACGAATACCCTCATTCGACAGAATATTCTTTGTGTA--AGGAGT--TTCGA 34785 Query 23519 ACC----ATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAA 23574 || |||||| || || || | ||| || || || ||||| || || ||||| Sbjct 34784 ACTCGGGATCTTCTGCTGCGCGCACCTCCTGGGAGACGAAGTCATACGCCCGCAGATTCG 34725 Query 23575 GAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACA 23634 | || || |||| | ||||||| | | || ||| |||| || || || |||| Sbjct 34724 GGGCTAGACCAACTACTCCAATAGCACTCATCCGTGAACCAGTGACGGGTACGAATAACA 34665 Query 23635 TAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAAC 23694 | |||||| ||| ||| || ||| ||||| ||| | |||| |||||||| | Sbjct 34664 TGGGGAAGTGTGACCGACGTTTGTTGGGGGGGGCAACACCGGATGTTTGGGACCAAAAGC 34605 Query 23695 GATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAG 23754 |||| || |||||||| ||||| ||||| || || || | || | | || || | Sbjct 34604 GATTAGCAGTAACCATGGAATAAGTCTCTTCAGATTGGGTCGGATTGGAGGCGCGGAATG 34545 Query 23755 TGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAG 23814 | || || || ||||| || ||||||||||||| || || | || ||| ||||| Sbjct 34544 TATTCGCGCCATCACCATCCTCGAACAGTGTATTCTCCACGGTTGCGCCGTGAGTAGCAC 34485 Query 23815 AGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCC 23874 | | || | ||| ||| |||||||||||||||||||| || |||||||| |||| Sbjct 34484 GTGGGGGAGCAGCACCCGGTACTCCAGCAACTCCCATCATATGAAACGGGTTGAGGGTCC 34425 Query 23875 AGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCG 23934 | ||||| | ||||| ||| ||| | | | | ||| || || || |||||| | || | Sbjct 34424 AATTATGGAGACCCTGAGGGAGGAGGATGGATCGGAAGATGGCTGCTACACCGGAGCTGG 34365 Query 23935 GCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAG 23994 | || | |||| | ||||| ||||| |||| ||| | | |||| | || | || | Sbjct 34364 GTGCGGAAAACCGACCGGACTGGCCCAACGGATGGATCAAGGATACGGGAACAGAAACGG 34305 Query 23995 CAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACG-GATTCCAATTAGA-CGTGCCAG 24052 | || ||| | ||||| || || || || || ||||| |||| || ||| || || || Sbjct 34304 CGATGGGAGCGGAAAACGCGATTGCGTTATACGGACGCGATTGCA--CAGATCGAGCGAG 34247 Query 24053 TTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGA 24112 ||| | || || |||||| ||| || | |||| ||||| ||||| || || |||| Sbjct 34246 TTCGGATTGGCGCAACATAGGACCCATCAAACCAAAAGCACCATGGAGGGCGACGAAGGT 34187 Query 24113 CCAAAGCCCTCCAAGTTGG-AGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAA 24171 ||| || || || | |||| | | || | ||||| || ||||| | ||| |||||||||| Sbjct 34186 CCATAGACCACCTAATTGGCACCAACGGGTGAAA-TCTCCTTGCGCCTCGGGACCCCAAA 34128 Query 24172 GTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGT 24231 | | | | ||||| | || || || || || |||| | |||||| ||| Sbjct 34127 GCAACGGCGGGGAATGTGCTGGGCTGTTGGCGGGGGTGGATGCAGCGACGGTAAGAGAGT 34068 Query 24232 TAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTG 24291 | |||||| ||||||||||||| | ||| || ||||||| || ||| ||| || Sbjct 34067 TGCGACCCTCCGGATAGGAACTAGCCAATCCGTGAGTGTACCGTGAGGTGACAGAAGTTG 34008 Query 24292 TGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACC 24351 | || || | ||||||||| | | ||| ||| |||||||| || ||||||| Sbjct 34007 TACCCGTGAACCAACCGCCGGGAGAGAAATAGGCACGAGGAAGAAGCGATAGACCAGACC 33948 Query 24352 AACCCACAAAGACAAAGCGATC 24373 |||||| || |||| || || Sbjct 33947 GACCCACGAATGCAAAACGGTC 33926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665488094440560