Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq113 93.3 5e-14 seq25 93.3 5e-14 seq40 87.8 2e-12 >seq113 Length=557149 Score = 93.3 bits (102), Expect = 5e-14 Identities = 268/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAG-AGATTGTGGATTTTCTCAA 175250 ||||||| || |||||| || |||| | | || | | || | || || ||||| || Sbjct 60205 GATGTTGCTGGAGTTGACGAGGC-AAAGCAGGATTTCATGGAGGTGGTAGAGTTTCTAAA 60263 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | |||||||| | | || ||||| | ||| || ||| | || || | || Sbjct 60264 GAAGCCCGAGAGGTTTACTGCTGTGGGTGCAAGGATACCGAAAGGTGTGCTGCTGGTTGG 60323 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 ||||| ||||| || || | || ||| ||||| || || ||| | || || Sbjct 60324 GCCTCCAGGGACGGGGAAAACTTTGCTGGCCAAGGCCATTGCTGGAGAAGCTGGCGTGCC 60383 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 || || || | ||| | || | ||||||||||||||||| || || || || | Sbjct 60384 GTTTTTCTCAAT-CTCGGGGTCAGAGTTTGTGGAGATGTTTGTCGGGGTTGGAGCTTCGA 60442 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | || || || || || | | ||| || ||| ||||| ||||| ||| | || | Sbjct 60443 GAGTGCGGGACCTGTTCAAGAAGGCCAAGGAGAATGCTCCATGCATTGTTTTCGTCGACG 60502 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAG 175547 |||||||||||||||| | ||| | || | || | | | | || ||| ||||| | Sbjct 60503 AGATTGATGCGGTGGGAAGGCAGAGAGGCACAGGAATCGGAGG--AGGAAACGACGAACG 60560 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 ||| ||||| | || || || | || ||||||||||||||||| Sbjct 60561 AGAGCAAACTTTGAACCAGCTGTTAACGGAGATGGATGGCTTTGA 60605 >seq25 Length=1997012 Score = 93.3 bits (102), Expect = 5e-14 Identities = 268/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAG-AGATTGTGGATTTTCTCAA 175250 ||||||| || |||||| || |||| | | || | | || | || || ||||| || Sbjct 1919616 GATGTTGCTGGAGTTGACGAGGC-AAAGCAGGATTTCATGGAGGTGGTAGAGTTTCTAAA 1919558 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | |||||||| | | || ||||| ||||| || ||| | || || | || Sbjct 1919557 GAAGCCCGAGAGGTTTACTGCTGTGGGTGCAAAGATACCGAAAGGTGTGCTGCTGGTTGG 1919498 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 ||||| ||||| || || | || ||| ||||| || || ||| | || || Sbjct 1919497 GCCTCCAGGGACGGGGAAAACTTTGCTGGCCAAGGCCATTGCAGGAGAAGCTGGCGTGCC 1919438 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 || || || | ||| | || | ||||||||||||||||| || || || || | Sbjct 1919437 GTTTTTCTCAAT-CTCGGGGTCAGAGTTTGTGGAGATGTTTGTCGGGGTTGGAGCTTCGA 1919379 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | || || || || || | | ||| || ||| ||||| ||||| ||| | || | Sbjct 1919378 GAGTGCGGGACCTGTTCAAGAAGGCCAAGGAGAATGCTCCATGCATTGTTTTCGTCGACG 1919319 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAG 175547 |||||||||||||||| | ||| | || | || | | | | || ||| || || | Sbjct 1919318 AGATTGATGCGGTGGGAAGGCAGAGAGGCACAGGAATCGGAGG--AGGAAACGATGAACG 1919261 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 ||| ||||| | || || || | || ||||||||||||||||| Sbjct 1919260 AGAGCAAACTTTGAACCAGCTGTTAACGGAGATGGATGGCTTTGA 1919216 >seq40 Length=1708524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 291/451 (65%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||||||| ||| ||||| | | || |||||| ||||| || Sbjct 437196 GAGGTGGTGGAGTTTCTCAAGAGACCAGAGAGGTTTACTGCCGTTGGTGCTAAGATTCCG 437137 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | | || | || ||| ||||| || || || | || || ||| || Sbjct 437136 AAGGGAGTTTTGCTGGTCGGGCCGCCTGGTACTGGGAAAACGTTGCTTGCTAAAGCTATT 437077 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || || || | ||| || ||| || | ||| | | | ||||||||| | || Sbjct 437076 GCTGGAGAGGCCGGTGTTCCGTTCTTCTCGATCTCGGGGTCGGAGTTTGTGGAGGTTTTC 437017 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || || | ||||| ||||| || || | ||| | | ||| |||||| || Sbjct 437016 GTCGGGATTGGTGCGTCCAGGGTCCGTGACTTGTTTAAGAAAGCCAAGGAAAATGCTCCT 436957 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTA 175528 || ||||| ||| |||| |||||||||||||| ||| ||| || || | || | | | Sbjct 436956 TGCATTGTTTTCGTTGACGAGATTGATGCGGTTGGCCGGCAGCGAGGCACCGGAATCGGA 436897 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 | | ||| ||||| || |||||||| | || || || ||||| || |||||||| | Sbjct 436896 GG--TGGAAACGACGAAAGGGAACAAACTTTGAACCAGCTGCTCACTGAAATGGATGGAT 436839 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648 | || | || || | | || |||| || || || | | || |||||||||| Sbjct 436838 TCGAGGGCAACACAGGAGTAATAGTCGTTGCTGCTACAAACAGAGCTGACATCCTTGATG 436779 Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 ||| | || | || || | |||||||| Sbjct 436778 CCGCATTGCTGAGGCCAGGAAGATTTGATCG 436748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563947503040