Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq758 650 0.0 >seq758 Length=186484 Score = 650 bits (720), Expect = 0.0 Identities = 740/993 (75%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||||| ||| | |||||||| | || || || || | || ||||| ||| || Sbjct 93108 CTTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACT 93167 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||| || || ||||| | ||||| | ||||| || || ||||| ||||| Sbjct 93168 GATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || ||||| || || || ||||| |||||||||| || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || ||||||||||| || | ||| | ||| ||| || ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| ||||| |||| |||||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||||||| |||| | | |||||||||||||||||||||||| | ||| Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCG 93467 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 | |||||||| || |||||| |||||| |||||||| || || || || || | || Sbjct 93468 CTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGC 93527 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 || || | | || ||| | |||||||| || ||||| || | ||||| | ||||| Sbjct 93528 CGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAAT 93587 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| ||| | || ||||||||||| ||||| || || |||||||| Sbjct 93588 CTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCC 93647 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 ||||| ||| | || || ||||| ||||| || || | | || ||||||||||| || Sbjct 93648 GTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGG 93707 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 ||||| |||||| || | | || || ||||| | |||||| ||| || Sbjct 93708 TTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGG 93767 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 ||||| ||| || || ||||| |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 93768 TTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGG 93827 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 ||| |||||||||||||| ||| || || |||||||| ||| | ||||| ||| | || Sbjct 93828 TCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGC 93887 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 ||| ||||| || || || |||||||| ||||| | ||| | ||| ||||| ||||| Sbjct 93888 TGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAA 93947 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 ||| |||||||||||||| ||||| ||| | ||||| | ||||| ||||| | ||||| Sbjct 93948 CCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACAC 94007 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 ||||| || || | |||||||| || |||||||| ||||||||||| |||||||| Sbjct 94008 ATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGC 94067 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 ||||||||||| || || || ||| | | ||| Sbjct 94068 TCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 253 bits (280), Expect = 2e-62 Identities = 665/1007 (66%), Gaps = 12/1007 (1%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 167085 |||||| ||| | || || ||||||| || || || ||||||| || ||| || Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 167086 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 167145 || ||| ||| | || ||||||||| | || || || |||| ||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 167146 TATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAG 167203 || ||||| ||| | || || | |||| |||||| |||| |||||| | || | Sbjct 34028 TACACTCACGGATTGGCTAGTTCC--TATCCGGAGGGTCGCAACTCTCTTACCGTCGCTG 34085 Query 167204 TTAGTACTCCAGC--AGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATC 167261 || || || | | | | | ||||| | | || |||||||| || | Sbjct 34086 CATCCACCCCCGCCAACAGCCCA--GCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGC 34143 Query 167262 TCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 167321 ||||| |||||| | | ||| |||| | || || || ||| | || || || ||||| Sbjct 34144 GCAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCA 34203 Query 167322 CGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTG 167380 || || |||| | | || ||| ||| | || || | ||||| ||||| ||| || Sbjct 34204 TGGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTG--TG 34261 Query 167381 GTATC-CGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTT 167439 ||| ||||| || || || || || || || | ||| || || || | ||| ||| Sbjct 34262 CAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTA 34321 Query 167440 TTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCC 167499 | | | || |||| | || || | | |||| | || || || ||| || || Sbjct 34322 TCCTTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCA 34381 Query 167500 GCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTT 167559 ||||||||||||| | ||||| ||| || || |||| || ||||| || || || ||| Sbjct 34382 GCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTT 34441 Query 167560 CATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTT 167619 ||||||||||| || || || | | ||||| ||| | ||| | || || | Sbjct 34442 CATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCA 34501 Query 167620 ACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGAT 167679 || || |||||||| ||| || |||||||| || || || || || | | || Sbjct 34502 ACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAAT 34561 Query 167680 TCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATC 167739 | || || |||||||||||||| |||||||| || || || || ||||| || | Sbjct 34562 CCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACA 34621 Query 167740 TTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTT 167799 | ||| |||| | ||||||||| || || ||| ||||||||||| ||||| Sbjct 34622 TCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTC 34681 Query 167800 ATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTAC 167859 | || ||| | ||||| | ||||||| || | ||||| || || || Sbjct 34682 ACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTAT 34741 Query 167860 GATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACT 167919 || ||||| || || ||| | | || || || ||||| ||||| |||||| || || Sbjct 34742 GACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACA 34801 Query 167920 AAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCAT 167979 || || || || |||||| ||| |||| || ||| | ||| || ||||| |||||| Sbjct 34802 AAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCAT 34861 Query 167980 GAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 || ||| | || ||||| ||||| ||||| || || || ||||| || Sbjct 34862 GAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCT 34908 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||||||| |||||| || ||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 7693 TTCCTCAGTGGCTCAGTGGTAGAGCGCTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 7634 Query 18188 CCTACCTGGGGAG 18200 |||||||| |||| Sbjct 7633 CCTACCTGAGGAG 7621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||||||| |||||| || ||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 48724 TTCCTCAGTGGCTCAGTGGTAGAGCGCTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 48783 Query 18188 CCTACCTGGGGAG 18200 |||||||| |||| Sbjct 48784 CCTACCTGAGGAG 48796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561242682175200