Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq758 513 4e-141 >seq758 Length=186484 Score = 513 bits (568), Expect = 4e-141 Identities = 708/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | ||||| | |||||||| ||||||||||||||||| || ||||| || |||||| Sbjct 94100 TCAACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATA 94041 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | || || ||||| || ||||| || | || Sbjct 94040 CCAAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGGCTATCA 93981 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||||||||| ||||| || ||||| |||||||| || ||| |||| Sbjct 93980 ACTACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAAA 93921 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCT 40762 | ||||| ||| || || | || || ||||| |||||||| |||||||| | |||| Sbjct 93920 GCGGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAA-AAGTGTAGGGAACGGGA 93862 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 || || || ||||||||| || || | || ||| ||||||||||| |||||||| || Sbjct 93861 GTTATTAAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAAT 93802 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 |||||| || || |||||||||||||| | || || ||| |||||| | || || Sbjct 93801 GTTATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGT 93742 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| ||||| || | ||||| || | | || ||||||||| || | || || Sbjct 93741 GGTTTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCC 93682 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || ||||| || || || | ||| ||||| || ||||| || ||||||||||| || Sbjct 93681 GCCGAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGC 93622 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 |||||| || | ||| |||||||| || ||| |||||||||||||||||| || ||||| Sbjct 93621 TTGGAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAA 93562 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 || ||||| | || || | || || || || || |||| | || |||| Sbjct 93561 GCTTCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGA 93502 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||| || ||| ||||| || | |||||| | | | | ||||||||||| | ||| Sbjct 93501 GTACGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACC 93442 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 ||| |||||||| | | ||||||| || || |||| || || |||||||| Sbjct 93441 CATGTAGCAAGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGTT 93382 Query 41243 GTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTG 41301 ||||||||| || || | | ||||| ||||||| || |||||||| || | ||||| | Sbjct 93381 GTATAGCCATTCATCAATAGATGCCG-CTTCCCAAATGGGGTAGAAGTGCAAACCGATAG 93323 Query 41302 CGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGG 41361 || ||| | || | | ||| ||||| || |||||||||||||| || | || || | Sbjct 93322 CGGCGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAG 93263 Query 41362 AAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGA 41421 |||||||||| || || || || |||||||| ||||| ||||||||||| || | |||| Sbjct 93262 AAACGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGA 93203 Query 41422 AACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATA 41481 | | ||| ||||||| | | || ||||| || ||||| ||||| || | ||| | Sbjct 93202 ATACGGAGGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTAAA 93143 Query 41482 GGCGGTTGTCGGTGCTAGTGACCCA 41506 |||| || |||||||| |||| ||| Sbjct 93142 GGCGATTTTCGGTGCTGGTGATCCA 93118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701106498772