Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq758 538 4e-148 >seq758 Length=186484 Score = 538 bits (596), Expect = 4e-148 Identities = 707/973 (73%), Gaps = 10/973 (1%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| | | ||| || || ||||||||||||||||||||||| || |||||||| ||||| Sbjct 94100 TCAACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATA 94041 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG-TC 67471 ||||| || | ||| | ||||| ||||| || || || || | || || Sbjct 94040 CCAAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCC-CTGGCTATC 93982 Query 67472 AACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCAT 67531 ||| ||||||||||| |||||||||||||| |||||||| ||||| || | |||| Sbjct 93981 AACTACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAA 93922 Query 67532 TGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGA 67591 || || |||||||| | || || || | ||||| | ||| ||||| || | || Sbjct 93921 AGCGGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGA 93862 Query 67592 GTTGTTGAAAGAT-GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAA 67650 ||| || |||| | ||||| ||||||||||| ||||||||||| || |||||||| |||| Sbjct 93861 GTTATT-AAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAA 93803 Query 67651 TGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAG 67710 |||| || || || ||||| || || ||| ||||||| ||| || || | ||||| Sbjct 93802 TGTTATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAG 93743 Query 67711 TAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAAC 67770 | ||||| | ||| || |||||| || | ||||| ||||||||||| || || || | Sbjct 93742 TGGTTTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATC 93683 Query 67771 CACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTG 67830 | |||||||| || || || || | ||| ||||| || ||||||||||||||||| || | Sbjct 93682 CGCCGAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAG 93623 Query 67831 CTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGA 67890 |||||||||||| ||| |||| || || ||||| || || | |||||| |||| |||| Sbjct 93622 CTTGGAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGA 93563 Query 67891 AAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAG 67950 | |||||||| | ||| |||| ||| || || ||| || || | || || || | Sbjct 93562 AGCTTCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTG 93503 Query 67951 AGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGAC 68010 |||| || ||| ||||||||| |||||||| | ||| | ||||||||||| ||||| Sbjct 93502 AGTACGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGAC 93443 Query 68011 CACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCAT 68070 | ||| | | ||| | |||||||| | || | |||| | | || || || | Sbjct 93442 CCATGTAGCAAGCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCGT 93383 Query 68071 TATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTG 68130 | || | ||| ||||| | || ||| |||||||| || || |||||||| | |||||| | Sbjct 93382 TGTATAGCCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATAG 93323 Query 68131 CGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTG 68190 || || | || | || ||||||||| || || ||||| ||||| || || ||||| | Sbjct 93322 CGGCGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCAG 93263 Query 68191 CAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA 68250 ||| || || | ||||| || ||||| ||||| || ||||| || || ||| | |||| Sbjct 93262 AAACGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATGA 93203 Query 68251 A---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACAT 68307 | | | ||||| | | | || | || ||||||| ||||||||||| |||| | Sbjct 93202 ATACGGAGGTTGCAGTT---AACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGT 93146 Query 68308 AGATGCGATTGTC 68320 | | |||||| || Sbjct 93145 AAAGGCGATTTTC 93133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566941828175280