Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq758 695 0.0 >seq758 Length=186484 Score = 695 bits (770), Expect = 0.0 Identities = 757/996 (76%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| | | ||| || || |||||||||||||| |||||||| ||||||||||| |||||| Sbjct 94100 TCAACGGAAGCCAGATCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACCTCCATA 94041 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAAC-CTTACCAGAACTATC 67952 || | |||||||||| || ||| ||||| || | || | | || | ||||| Sbjct 94040 CCAAGGTTGGCGCGGTTGATAATGTCGGCCCATGTGTTTATGACACGTCCCTGG-CTATC 93982 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || | || ||||| ||||||||||| || |||||||| ||||| ||||| | || | Sbjct 93981 AACTACGGATTGGTTAAAGTTGAAACCGTTTAGGTTGAAAGCCATTGTGCTTATGCCCAA 93922 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 || || ||||||||||| || || ||||| ||||| | ||| ||||| || |||||||| Sbjct 93921 AGCGGTAAACCAGATACCTACTACTGGCCAAGCAGCCAAGAAAAAGTGTAGGGAACGGGA 93862 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132 ||| || || ||||| |||||||||| ||||||||||| || || ||||| ||||| Sbjct 93861 GTTATTAAAGCTAGCATATTGGAAGATCAATCGACCGAAGTAACCGTGAGCAGCTACAAT 93802 Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192 ||| || || || ||||| ||||| ||| ||||||| ||| ||| ||| | ||||| Sbjct 93801 GTTATATGTTTCCTCTTCCTGACCAAACCTGTAACCCGCGTTAGCGGATTCATTCTCAGT 93742 Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252 |||||| || | ||| |||||| |||| |||||||||||| |||||||| |||||||| Sbjct 93741 GGTTTCCCGGATCAGGCTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGAGATCC 93682 Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 68312 || ||||||||||| || || | ||| ||||| || ||||| ||||||||||| || || Sbjct 93681 GCCGAATACGCCAGCCACACCCAACATGTGGAACGGATGCATAAGGATGTTGTGTTCAGC 93622 Query 68313 TTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAA 68372 ||||||||| | ||| ||||||| || ||||| || || | |||||| |||| ||||| Sbjct 93621 TTGGAACACGATCATAAAGTTGAAGGTGCCAGAGATTCCTAAAGGCATACCGTCGGAGAA 93562 Query 68373 CGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGA 68432 |||||||| | ||| |||| || || || |||| || ||||||||||| || || Sbjct 93561 GCTTCCTTGACCAATAGGGTAGATCAAAAAAACGGCGGTGGCGGCTGCAACAGGGGCTGA 93502 Query 68433 GTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCC 68492 ||| |||||| ||||||||| |||||||| | || || ||||||||| ||||| || Sbjct 93501 GTACGCAACAGCGATCCAAGGGCGCATACCCAAGCGGAAGCTAAGTTCCCACTCACGACC 93442 Query 68493 CATGTATGCAAAGATAC--CAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCA 68550 |||||| |||| | ||| ||| ||||||||||| | | |||| | | ||||| || Sbjct 93441 CATGTA-GCAA-GCTACTCCAAGCAGGAAGTGAAGAACGATTAGTTCGTAGGGACCGCCG 93384 Query 68551 TTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATT 68610 ||||| | ||| ||||||| | ||| |||||||||||||| || ||||| | ||| || Sbjct 93383 TTGTATAGCCATTCATCAATAGATGCCGCTTCCCAAATGGGGTAGAAGTGCAAACCGATA 93324 Query 68611 GCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCA 68670 || || | || | || ||||||||| || || ||||| || || | ||| |||||| Sbjct 93323 GCGGCGGAGGTGGGGATAATAGCACCAGAGATTATATTGTTCCCGTATATAAGAGAACCA 93264 Query 68671 GCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATG 68730 | ||| || || |||||||| || || || || || ||||| ||||| || || ||| Sbjct 93263 GAAACGGGCTCGCGAATACCGTCAATATCTACTGGCGGAGCTGCGATAAAAGCAGTAATG 93204 Query 68731 AA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTA 68789 || || || |||||| | | ||| || ||||||||||| || |||||||| |||| ||| Sbjct 93203 AATACGGA-GGTTGCAGTTAACAGGGTCGGGATCATCAGTACACCGAACCACCCAATGTA 93145 Query 68790 AAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||||| || || ||| || | ||| |||||||| Sbjct 93144 AAGGCGATTTTCGGTGCTGGTGATCCAATCGCAGAA 93109 Score = 356 bits (394), Expect = 3e-93 Identities = 689/1013 (68%), Gaps = 14/1013 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 || |||| || || |||||||| ||||| || || |||||||| | ||||||||| || | Sbjct 34913 ATCAAAGAGCGTTTCCACGGGGTAGAACCTCCTCGGGGAATACGAGGTTTTCATGAGGCT 34854 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| |||||| | ||||| ||||||||||| Sbjct 34853 GATCCTGAGCTGCCATCCAAGCACGAATACCCTCATTCGACAGAATATTCTTTGTGTAAG 34794 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 || |||||||| || ||||||||||| | | ||| ||||| || |||||||| || | Sbjct 34793 GAGTTTCGAACTCGGGATCTTCTGCTGCGCGCACCTCCTGGGAGACGAAGTCATACGCCC 34734 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | || || | || ||||||| | || || | ||| ||| ||| | || || | Sbjct 34733 GCAGATTCGGGGCTAGACCAACTACTCCAATAGCACTCATCCGTGAACCAGTGACGGGTA 34674 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 | || ||||| ||| || ||| | || ||| |||| ||| | | || | Sbjct 34673 CGAATAACATGGGGAAGTGTGACCGACGTTTGTTGGGGGGGGCAACACCGGATGTTTGGG 34614 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| ||||| || ||||||||||| || ||||| ||||| ||| || | | | | | Sbjct 34613 ACCAAAAGCGATTAGCAGTAACCATGGAATAAGTCTCTTCAGATTGGGTCGGATTGGAGG 34554 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || || || |||||||| || |||| |||||||| || || | || | Sbjct 34553 CGCGGAATGTATTCGCGCCATCACCATCCTCGAACAGTGTATTCTCCACGGTTGCGCCGT 34494 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 || | ||| | ||| ||||| | | || || || ||||||||||||||||||| Sbjct 34493 GAGTAGCACGTGGGGGAGCAGCACCCGGTACTCCAGCAACTCCCATCATATGAAACGGGT 34434 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | | |||||| ||||||| || || ||| ||| | | |||| ||||| |||| || | Sbjct 34433 TGAGGGTCCAATTATGGAGACCCTGAGGGAGGAGGATGGATCGGAAGATGGCTGCTACAC 34374 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 || | || ||| |||||| || || || |||| || | ||| | | || || Sbjct 34373 CGGAGCTGGGTGCGGAAAACCGACCGGACTGGCCCAACGGATGGATCAAGGATACGGGAA 34314 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACG-GAT---ACCGATG 67241 || |||| ||||| ||| | || ||||| || || || || ||||| ||| || ||| Sbjct 34313 CAGAAACGGCGATGGGAGCGGAAAACGCGATTGCGTTATACGGACGCGATTGCACAGAT- 34255 Query 67242 AGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 || || ||||| | ||||| | ||| ||| || | | | ||||| || ||||| Sbjct 34254 ---CGAGCGAGTTCGGATTGGCGCAACATAGGACCCATCAAACCAAAAGCACCATGGAGG 34198 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || || || |||| || || || | |||| ||| ||| |||||| || || | ||| Sbjct 34197 GCGACGAAGGTCCATAGACCACCTAATTGGCACCAACGGGTGAAATCTCCTTGCGCCTCG 34138 Query 67362 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 ||||||||||| | | | ||||| | | || || || || |||| | Sbjct 34137 GGACCCCAAAGCAACGGCGGGGAATGTGCTGGGCTGTTGGCGGGGGTGGATGCAGCGACG 34078 Query 67422 GTGAGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTT 67478 || ||| | || |||||| ||| ||||| || | |||||||||||||| Sbjct 34077 GTAAGAGAGTTGCGACCCTCCGGATAGGAACTA---GCCAATCCGTGAGTGTACCGTGAG 34021 Query 67479 GTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGA 67538 |||||| | || ||||| || | ||| || || | | ||| ||| |||| ||| Sbjct 34020 GTGACAGAAGTTGTACCCGTGAACCAACCGCCGGGAGAGAAATAGGCACGAGGAAGAAGC 33961 Query 67539 AGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||| ||||||| |||||| || |||| || |||| | ||| |||||| Sbjct 33960 GATAGACCAGACCGACCCACGAATGCAAAACGGTCTCTCCTTGGCCGGTCATC 33908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||||| ||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 7621 CTCCTCAGGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGAGCGCTCTACCACTG 7680 Query 35571 AGCTACTGAGGA 35582 ||| |||||||| Sbjct 7681 AGCCACTGAGGA 7692 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||||| ||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 48796 CTCCTCAGGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGAGCGCTCTACCACTG 48737 Query 35571 AGCTACTGAGGA 35582 ||| |||||||| Sbjct 48736 AGCCACTGAGGA 48725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572048979784560