Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq90 107 6e-18 seq41 104 7e-17 seq20 87.8 5e-12 seq64 86.0 2e-11 >seq90 Length=797443 Score = 107 bits (118), Expect = 6e-18 Identities = 214/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||||||||| ||| | || ||| | || || ||||| || || || || Sbjct 456757 CATCACGTCTTCCATTGCCTTCACTAGACGTCTTTGGATGTAACCTGTCTCCGAAGTCTT 456698 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || |||||||| || ||||| | ||||| ||||| || || ||| | | ||| | ||| Sbjct 456697 CACTGCTGTATCGATAAGACCCTCTCGACCTCCCATGGCGTGAAAGTAGAACTCCTGCGG 456638 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || |||| | | | || | || ||||| || | |||||| | ||| Sbjct 456637 TGTGAGACCCCGTAGATAAGAATTTTCGACGAACCCCCTACTCTCGGGGCCGTAGTCATC 456578 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| |||||||| || || || |||| | ||| | || || || || || ||||| Sbjct 456577 CTTTGTAAAGTGCGGGAGCGTTCTGTCGATGAAACCGAACGGAATTCGTTTCCCTTCAAC 456518 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAG 302862 |||||||||||||| || | ||||||||| || || || | || | |||||| || Sbjct 456517 GTTCTGCTGTCCCACACAAGCAATCATCTGGGATATGTTGATGAACGA--GCCCTTCGAT 456460 Query 302863 CCAGCATTTACCATA 302877 ||||| | |||||| Sbjct 456459 CCAGCGGTCACCATA 456445 >seq41 Length=1743703 Score = 104 bits (114), Expect = 7e-17 Identities = 213/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||||||||| ||| | || ||| | || || ||||| || || || || Sbjct 511849 CATCACGTCTTCCATTGCCTTCACTAGACGTCTTTGGATGTAACCTGTCTCCGAAGTCTT 511790 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || |||||||| || ||||| | ||||| ||||| || || ||| | | ||| | ||| Sbjct 511789 CACTGCTGTATCGATAAGACCCTCTCGACCTCCCATGGCGTGAAAGTAGAACTCCTGCGG 511730 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || |||| | | | || | || ||||| || | |||||| | ||| Sbjct 511729 TGTGAGACCCCGTAGATAAGAATTTTCGACGAACCCCCTACTCTCGGGGCCGTAGTCATC 511670 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| ||||| || || || || |||| | ||| | || || || || || ||||| Sbjct 511669 CTTTGTAAAATGCGGGAGCGTTCTGTCGATGAAACCGAACGGAATTCGTTTCCCTTCAAC 511610 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAG 302862 |||||||||||||| || | ||||||||| || || || | || | |||||| || Sbjct 511609 GTTCTGCTGTCCCACACAAGCAATCATCTGGGATATGTTGATGAACGA--GCCCTTCGAT 511552 Query 302863 CCAGCATTTACCATA 302877 ||||| | |||||| Sbjct 511551 CCAGCGGTCACCATA 511537 >seq20 Length=2302610 Score = 87.8 bits (96), Expect = 5e-12 Identities = 129/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| ||||||| ||||| || || |||||||||||||| |||||||| || || || | Sbjct 1820631 TGCTCCGTGTGCGATCATGCAGTCCCGCTCCATTTCACCAAAACGAAGGCCTCCGTCCCT 1820572 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCT 251600 | | ||| || || ||||| ||||| || ||| ||| |||||| ||| Sbjct 1820571 TGATCGACCTTCTGCGGGCTGGCGAGTAAGTATTTGAAC---AGGACCACGCCCACGGGA 1820515 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || |||||| | ||||||||||| | ||||||||| ||| || |||||||| || Sbjct 1820514 GTGAATCTTATCGTCGACCATATGCTTCAACCGCTGGTAGTATGTTGGCCCGATGAAAAT 1820455 >seq64 Length=1151164 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| ||||| || | |||||| || | | Sbjct 1110541 TACCTTTCCTCTTGCCTCCCCCTTGATCGACATAGCGAGCGGTATCATTGAACACTCGAA 1110482 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC---CAGATG 156162 ||||||||| ||| || || || ||||| || ||||| || |||| ||| || | Sbjct 1110481 GCATAGGAACAATCCCGTTCGACGTGCCGTTCGTTCCACGGATAT---AACTGTTAGTGG 1110425 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 ||||| |||||| | | || || ||||| || | | || ||| || || | Sbjct 1110424 CGCGAATATTATGGACAGAGAGGCCGATACCCCCGGCTGACTTGCTGATTACTGCACACT 1110365 Query 156223 CCTTTACAGTATTGAAAATACCTTCAAT 156250 |||| | |||| |||| |||||||| Sbjct 1110364 CCTTCAGGGTATCATAAATGCCTTCAAT 1110337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471803305891446