Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq758 657 0.0 >seq758 Length=186484 Score = 657 bits (728), Expect = 0.0 Identities = 745/995 (75%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| || || ||| | ||| || | || || || || | || ||||||||||| || Sbjct 93108 CTTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACT 93167 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 |||||| || || ||||| | |||||| ||||| || || ||||| ||||| Sbjct 93168 GATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || || || || || || || || |||||| |||||||||| || ||||| ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 || |||||||||||| || | || | || |||||||||| |||||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || ||| | ||||||||||| |||||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 151138 CTTCCACTTCCTGATTG--GTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 | ||||||||| ||| ||| || ||| ||||||||||||||||||||||| | | Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTC 93465 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGT 151255 |||||||||||||| || |||||| ||||| ||||| || || ||||| || || | Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 151256 GCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGT 151315 || || || | |||| ||| | |||||||| ||||| || | ||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 151316 ATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAC 151375 || |||||||| ||||||| ||| | || |||||||| || |||||||| || ||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 151376 CCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCAC 151435 || ||||| ||| | ||||||||||| || ||||| ||||| || ||| || ||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 151436 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTAT 151495 ||||| |||| |||||| ||| | || || ||||| || || || ||| ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTT 151555 ||||||| ||| ||||| ||||| || || || ||||| || || || ||||||||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 151556 GGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 151615 ||||| | ||||||||||| ||| ||| || || |||||||| || ||||| ||| | Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTG 93885 Query 151616 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTC 151675 || || ||||| || || ||||||||||| || || | || | ||||| ||||| ||| Sbjct 93886 GCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTC 93945 Query 151676 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 151735 ||||| |||||||||||||| ||||| ||| | | ||| | ||||| ||| | ||| Sbjct 93946 AACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAAC 94005 Query 151736 ACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 151795 || ||||| ||| || | ||||| || || |||||||| |||||||| || ||||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAAC 94065 Query 151796 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 ||||||||||||||||| || || ||| | | ||| Sbjct 94066 GCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 347 bits (384), Expect = 1e-90 Identities = 696/1025 (68%), Gaps = 14/1025 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||| ||| | |||||||||||| | || || ||| ||||||| Sbjct 33896 TTTGATAACACGGATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGT 33955 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || ||| |||| ||| ||| | || ||||||||| | || || || |||| Sbjct 33956 CTATCGCTTCTTCCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCT 34015 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-CGCAAACTTTCT 152537 | || |||| |||||||| ||||| |||||||||| |||||| ||||| || ||| Sbjct 34016 GTCACCTCACGGTACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAA-CTCTCT 34074 Query 152538 TACTGCGGCAGTTTCTACTCCAGC--AGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 ||| | || | || || || || | | | | | ||||| | | | | || ||| Sbjct 34075 TACCGTCGCTGCATCCACCCCCGCCAACAGCCCA--GCACATTCCCCGCCGTTGCTTTGG 34132 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 ||||| ||||| ||||| |||||| | | ||| || | || || || ||| | || Sbjct 34133 GGTCCCGAGGCGCAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTC 34192 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCA 152715 || || ||||| || ||||| | | | || ||| ||| | ||||| | ||||| || Sbjct 34193 GTCGCCCTCCATGGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCT 34252 Query 152716 CGTCTCATCGGT---ATC-CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 152771 || ||| || ||| ||||| || || || || ||||| || | ||| ||||| || Sbjct 34253 CG----ATCTGTGCAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGT 34308 Query 152772 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 152831 || |||| ||| | | ||| | || |||| || || || |||||| ||| || Sbjct 34309 TTCTGTTCCCGTATCCTTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAG 34368 Query 152832 TTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGAC 152891 | ||| || ||||| |||||||||| | | ||| ||| ||| || |||| || ||||| Sbjct 34369 CTCCGGTGTAGCAGCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGAC 34428 Query 152892 ATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951 | || ||||||||||||||||| ||||| || | ||| | || | ||| Sbjct 34429 CCTCAACCCGTTTCATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGC 34488 Query 152952 CATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTT 153011 | ||| || | || || |||||||| ||| | |||||||| || || || || Sbjct 34489 TACTCACGGCGCAACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATT 34548 Query 153012 CAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTT 153071 | || | | | || ||| |||||||| ||||| |||||||||||||| || || Sbjct 34549 CCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTT 34608 Query 153072 CTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCT 153131 |||||||| | || || |||| ||| ||||| || || ||| ||| | Sbjct 34609 TTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTT 34668 Query 153132 GTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAA 153191 || ||||| || | ||| ||| | |||||||| | ||||||| || | || Sbjct 34669 ATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAA 34728 Query 153192 TCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGA 153251 ||| || || || || || || || || || | | || |||||||||| || || || Sbjct 34729 TCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGA 34788 Query 153252 GACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGT 153311 || || || |||||||| || | ||| || ||| ||||||||||| ||||| || Sbjct 34789 AACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCA 34848 Query 153312 TGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || || |||||||| ||| |||| ||||| || ||||| | || || || |||||||| Sbjct 34849 GGATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCT 34908 Query 153372 GTGAT 153376 |||| Sbjct 34909 TTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549617192327760