Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq758 513 2e-140 >seq758 Length=186484 Score = 513 bits (568), Expect = 2e-140 Identities = 697/972 (72%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 ||| || |||||| | ||| |||| ||||| ||||| | |||||||| || |||| Sbjct 93129 CACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAAC 93188 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 ||| | | |||||| || || ||||| ||||| ||||| ||||| ||||| || Sbjct 93189 TGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTAT 93248 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | || || ||| | |||||| | |||| || ||||| || |||||||||||| | | Sbjct 93249 TCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTAT 93308 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 || | || ||| || || || |||||||| ||||| |||||||| || |||| || Sbjct 93309 CCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGA 93368 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 72554 || ||| | || ||||| ||||| ||| | || | || | |||||||| ||||| | Sbjct 93369 TGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGT 93428 Query 72555 CTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGAT 72614 || |||||||||| | |||||||||| | | | | || ||| | |||||||| Sbjct 93429 AGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGAT 93488 Query 72615 ATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATT 72674 ||| || |||||||| ||||| | || || || || || | | || || | Sbjct 93489 CGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTAT 93548 Query 72675 CGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCAT 72734 ||||| || ||||| || |||||||| |||| ||||| || || |||||||| || Sbjct 93549 TGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTAT 93608 Query 72735 GTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 72794 | ||||||||||||| ||||||||||| || ||||| || ||||| ||| ||||| || Sbjct 93609 GATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGGC 93668 Query 72795 AGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCT 72854 || | ||||| || ||| |||||||| ||||| ||||| | || ||||| || Sbjct 93669 TGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCCT 93728 Query 72855 AATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGA 72914 ||| | || || || ||||| || ||| || || | ||| || || ||||| Sbjct 93729 GATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAGA 93788 Query 72915 AGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGC 72974 ||||||||||||||||| |||||||| || ||||||||| |||| |||||||| ||||| Sbjct 93789 GGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATGC 93848 Query 72975 ATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGT 73034 || || ||||| ||||| ||||||| ||| | |||| | || ||||| || | Sbjct 93849 TAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTAT 93908 Query 73035 ATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAA 73094 ||||| ||| | |||| || | |||||||| |||||||| ||||| |||||||| || Sbjct 93909 CTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTAA 93968 Query 73095 CCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAG 73154 |||||| || || ||| | ||| | || ||||||| || || | ||| | Sbjct 93969 CCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACATGGGCCGACATTATCAACCG 94028 Query 73155 AGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCT 73214 || |||||||| ||||| |||||||||||| | || || ||||||||||| ||||| || Sbjct 94029 CGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGATCT 94088 Query 73215 AGCATCTGCTGA 73226 || || | ||| Sbjct 94089 GGCTTCCGTTGA 94100 Score = 199 bits (220), Expect = 5e-46 Identities = 663/1027 (65%), Gaps = 31/1027 (3%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| || || |||||| ||||| | |||| | || |||||||||| | ||| | Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 ||| |||| || | | ||| ||||||||| || || |||| || |||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGA-GCAAATTTTTTAACTGCAGCAGT 73554 ||||| || || | || || |||| ||||| |||| | | ||| | | || | Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTC-GCTGC 34086 Query 73555 ATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACA 73614 ||| || || | | | ||| | ||| |||||||| || ||||| || Sbjct 34087 ATCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCA 34146 Query 73615 AGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGG 73674 ||||||| | || |||| ||||||||||| ||||||| ||| || || | ||||| Sbjct 34147 AGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGG 34206 Query 73675 AGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGAT 73734 | ||||| | || ||| ||| | | || | || | || || ||| | || Sbjct 34207 TGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAAT 34265 Query 73735 A-CGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCA---CGAGCATCT 73790 ||||| || |||||| | || ||||| || ||||| || ||| | | ||| Sbjct 34266 CGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGT-TTCTGTTCCCGTATCC 34324 Query 73791 TTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAG 73850 || || |||| || || ||| || |||| | |||||| | |||||| |||| Sbjct 34325 TTG--ATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAG 34382 Query 73851 CAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTC 73910 | ||||| || | || | || |||||| |||| ||| || || || || |||| Sbjct 34383 CCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTC 34442 Query 73911 ATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAA 73970 |||||||||| || || || ||| |||| || | | |||| | || || |||| Sbjct 34443 ATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAA 34502 Query 73971 CAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTA 74030 | || |||| ||| ||| || || ||| || || | Sbjct 34503 CCGTGGAGAATACACTGTTCGAGGATGG------------TGATGGCGCGAAT------- 34543 Query 74031 CAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTA 74090 || ||| | || | | |||| || || |||||||||||| ||| ||||||||| Sbjct 34544 --ACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTA 34601 Query 74091 ACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCC 74150 | | || ||||| || | || ||| | || | |||||| | | |||||||| Sbjct 34602 ATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCC 34661 Query 74151 TTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAG 74210 ||||| |||||||| |||| ||| ||| |||| || | || ||||||| Sbjct 34662 CCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAG 34721 Query 74211 CACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAG 74270 | | || || | || || ||||| || || || ||| | | ||||||||||| || | Sbjct 34722 CCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCG 34781 Query 74271 AGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGT 74330 |||| ||||| ||||| ||||| ||||| ||||| ||||| | || |||||| Sbjct 34782 AGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGG 34841 Query 74331 CATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCA 74390 || || ||||| || ||||| ||| | || ||||| || || || | || || || | Sbjct 34842 CAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAA 34901 Query 74391 ACGCACT 74397 |||| || Sbjct 34902 ACGCTCT 34908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572868172022640