Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq41 116 5e-20 seq33 104 3e-16 seq46 100 3e-15 seq9 96.9 4e-14 seq1 96.9 4e-14 seq21 89.7 6e-12 >seq41 Length=1743703 Score = 116 bits (128), Expect = 5e-20 Identities = 214/312 (69%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 512000 GTGCTGGGCATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCT 512057 ||||||||||||||||||| | | | ||||| || ||| ||| || ||||| | Sbjct 513317 GTGCTGGGCATCGAGGCCGTCAGG--CAAGCTCTCCTCAAGGAGCTCAGGGAAGTCATAT 513374 Query 512058 CCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCT 512117 |||| |||||| ||||||||||| || | ||| | || | |||| |||| | Sbjct 513375 CCTTCGACGGCTCCTACGTCAACTACAGGCACCTGGCCATCCTGTGCGACGTCATGACTT 513434 Query 512118 GCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCC 512177 ||| || | |||| |||| |||||||| |||||||| |||| |||| Sbjct 513435 ACCGGGGCCACCTCATGGCGATCACTCGCCACGGTATCAACCGCAACGACACCGGCCCGA 513494 Query 512178 TGTCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCG 512237 || ||| ||| ||||||||||| || ||||||||| | |||||||||| ||||| | Sbjct 513495 TGATGCGCTGCTCGTTCGAAGAGACGGTGGACATCCTCCTGGACGCGGCGGTGTTTGCTG 513554 Query 512238 AGACCGACAAGATCACCGACGGCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGC 512297 || | ||| | ||| | | || ||||| |||||| || || ||| || | Sbjct 513555 AGGCGGACCATCTCAGGGGC------GTCACCGAAAACATCATGCTCGGGCAGCTAGCTC 513608 Query 512298 CCATCGGCACGG 512309 ||||||| |||| Sbjct 513609 CCATCGGGACGG 513620 >seq33 Length=1840579 Score = 104 bits (114), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 |||| |||| ||| ||||| ||||| ||| ||||| | |||| ||||| |||| Sbjct 1734088 TTTGCGTTGTTCCAGGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGC 1734147 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 | | ||||| ||||||||||||||||| | || ||||||||||||||||| || ||| Sbjct 1734148 CAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTTTCAAC 1734207 Query 1592291 ATCAAGTACG 1592300 |||||| ||| Sbjct 1734208 ATCAAGAACG 1734217 >seq46 Length=1506775 Score = 100 bits (110), Expect = 3e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232 ||| ||| ||| ||||| ||||| ||| ||||| | |||| ||||| |||| | Sbjct 1315688 TGATTTGTTCCAGGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCA 1315747 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | ||||| ||||||||||||||||| | || ||||||||||||||||| || ||||| Sbjct 1315748 AACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTTTCAACAT 1315807 Query 1592293 CAAGTACG 1592300 |||| ||| Sbjct 1315808 CAAGAACG 1315815 >seq9 Length=3666672 Score = 96.9 bits (106), Expect = 4e-14 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | ||| || | ||||||||||||||||||||||| || Sbjct 2464963 GCTTGGCGAGCTCGCCGGGGAGGATGAGCCTCACGGCGGTCTGGATCTCGCGCGACGTGA 2465022 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATC 1254461 | ||| |||||| || ||||||| || | ||||| ||| ||| || | Sbjct 2465023 TGGTGGGCTTCTTGTTGTAGCGCGCCAGCCGCGCCGCCTC-CTGCGCGAGCTTCTCAAAG 2465081 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || || |||| || |||||||| | ||| | |||| | ||||| || | || || Sbjct 2465082 ATATCATTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTCGAGATCCCAATCTCCTGG 2465141 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||||||| | ||| Sbjct 2465142 TGGACCTGCTTGAGCACCTTGAAAATG 2465168 >seq1 Length=6951972 Score = 96.9 bits (106), Expect = 4e-14 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | ||| || | ||||||||||||||||||||||| || Sbjct 3079656 GCTTGGCGAGCTCGCCGGGGAGGATGAGCCTCACGGCGGTCTGGATCTCGCGCGACGTGA 3079597 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATC 1254461 | ||| |||||| || ||||||| || | ||||| ||| ||| || | Sbjct 3079596 TGGTGGGCTTCTTGTTGTAGCGCGCCAGCCGCGCCGCCTC-CTGCGCGAGCTTCTCAAAG 3079538 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || || |||| || |||||||| | ||| | |||| | ||||| || | || || Sbjct 3079537 ATATCATTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTCGAGATCCCAATCTCCTGG 3079478 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||||||| | ||| Sbjct 3079477 TGGACCTGCTTGAGCACCTTGAAAATG 3079451 >seq21 Length=2305360 Score = 89.7 bits (98), Expect = 6e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| | ||| |||||||||||||||| | | || Sbjct 758537 GCTTGGCGAGCTCTCCCGGGAGAATCAACCTCACCCCGGTCTGGATCTCGCGAGAGGTGA 758478 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATC 1254461 ||| |||||| || ||||||| || ||||| ||| ||| || | Sbjct 758477 CGGTGGGCTTCTTGTTGTAGAGCGCCAGCCGCGACGCCTCC-TGCGCGAGCTTCTCAAAG 758419 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||| ||||| | ||| | |||| ||||| ||| |||||| Sbjct 758418 ATGTCGTTGATGAAAGAGTCCATGATCCCCATGGCCTTGGACGAGATCCCCGTGTCGGGA 758359 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACG 1254552 || |||||||||||||||||| ||||| ||| Sbjct 758358 TGGACCTGCTTGAGCACCTTGAAGATGTACG 758328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107076994970286