Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 seq111 91.5 1e-13 >seq12 Length=2904818 Score = 100 bits (110), Expect = 2e-16 Identities = 201/297 (68%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 34317 CTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAG 34376 |||||||||||||||| ||| | ||| ||| |||| |||||| || || Sbjct 1286442 CTCAGTCTCCGGGTTGCTACAGCCATAGCACTGCACGTACTTCTTGATGAAGTGCTCCAG 1286383 Query 34377 CAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTA 34436 || || | ||| || |||||| | ||||| ||||| | | | || | Sbjct 1286382 CAACGCCGCCAGCTTCCCGTGGTCGTGAGCCCCGTTCACGATCGAGGTCCCCGTCTTCTC 1286323 Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||| | || || ||||| ||||||||||| || |||||||| |||| ||| |||||| Sbjct 1286322 ATCAAACTTCGACTGCGCTCCCAGCTCGCAGCCAAAGTACTTGGTCGTGTA---GGCCGG 1286266 Query 34497 ACGTC---CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 | | | ||||||||||| | || ||||||||||||| |||||||| || || Sbjct 1286265 GGGGCGGGCGAGCGCCTTGGCAACGTCCACCATGTTGACGATGTTGGTCTTGATACCATT 1286206 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 ||| || |||| ||||| | || ||||| ||||| | |||||| ||||| Sbjct 1286205 GCCGCGGCCCTCGATCTTGGTCACCAGCCGGGGCATCTTGTACCTGTAGAAGGCGTC 1286149 >seq111 Length=581462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||| | || || ||||| |||| |||||| || |||||||| |||| ||| |||||| Sbjct 471437 ATCAAACTTCGACTGCGCTCCCAACTCGCAGCCAAAGTACTTGGTCGTGTA---GGCCGG 471381 Query 34497 ACGTC---CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 | | | ||||||||||| | || ||||||||||||| |||||||| || || Sbjct 471380 GGGGCGGGCGAGCGCCTTGGCAACGTCCACCATGTTGACGATGTTGGTCTTGATACCATT 471321 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 ||| || |||| ||||| | || ||||| ||||| | |||||| ||||| Sbjct 471320 GCCGCGGCCCTCGATCTTGGTCATCAGCCGGGGCATCTTGTACCTGTAGAAGGCGTC 471264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837786117694