Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21 140 5e-27 seq6 131 3e-24 seq2 131 3e-24 seq1 131 3e-24 seq87 127 3e-23 seq9 127 3e-23 seq91 123 4e-22 seq74 123 4e-22 seq33 100 5e-15 seq46 96.9 5e-14 >seq21 Length=2305360 Score = 140 bits (154), Expect = 5e-27 Identities = 179/243 (74%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 758576 TGTACTTGGTGACGGCCTTGGTCCCCTCGGAGACGGCGTGCTTGGCGAGCTCTCCCGGGA 758517 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAG 1485586 |||| | ||| |||||||||||||||| |||| || | | || |||||| Sbjct 758516 GAATCAACCTCACCCCGGTCTGGATCTCGCGAGAGGTGACGGTGGGCTT---CTTGTTGT 758460 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | ||||||| || ||||| ||| ||| || | |||||||||| || ||| Sbjct 758459 AGAGCGCCAGCCGCGACGCCTC-CTGCGCGAGCTTCTCAAAGATGTCGTTGATGAAAGAG 758401 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 | ||||||| ||| | ||| ||||| ||| |||||| || ||||||||||||||| Sbjct 758400 TCCATGATCCCCATGGCCTTGGACGAGATCCCCGTGTCGGGATGGACCTGCTTGAGCACC 758341 Query 1485706 TTG 1485708 ||| Sbjct 758340 TTG 758338 >seq6 Length=4135178 Score = 131 bits (144), Expect = 3e-24 Identities = 175/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| |||| |||||| | || || ||||| | | | Sbjct 1797808 TACTTGGTGACAGCCTTGGTTCCCTCGGAGATTGCGTGCTTTGCGAGCTCGCCAGGGAAG 1797749 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG--- 1485588 || || | || | || ||||| ||||||| | ||| ||| ||||||| || Sbjct 1797748 ATGAGCCTGACCGAGGCCTGGACCTCGCGGCTCTGGATGGTGG---GCTTGTTGCTGTAT 1797692 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || ||||| || |||||||||||| | || |||| ||| || | ||| | |||| Sbjct 1797691 CGAGCCAGCCGCCCGGCCTCGGTGGACAGCCGCTCGAACATATCATGGACCAGGCTGTTC 1797632 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | |||| | ||||||| | ||| ||||| || |||||||| |||||| Sbjct 1797631 ATGATGTTCATGGCTTTGATCGAGATGCTGATGTCCGGGTGGACTTGCTTGAGTACCTTG 1797572 Query 1485709 TA 1485710 || Sbjct 1797571 TA 1797570 >seq2 Length=6181961 Score = 131 bits (144), Expect = 3e-24 Identities = 176/242 (73%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| |||| |||||| | || || ||||| | | | Sbjct 5592551 TACTTGGTGACAGCCTTGGTTCCCTCGGAGATTGCGTGCTTTGCGAGCTCGCCAGGGAAG 5592492 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG--- 1485588 || || | || | || ||||| ||||||| | | || || || ||||||| || Sbjct 5592491 ATGAGCCTGACCGAGGCCTGGACCTCGCGGCT-CTGAA--TGGTGGGCTTGTTGCTGTAT 5592435 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || ||||| || |||||||||||| | || |||| ||| || | ||| | |||| Sbjct 5592434 CGAGCCAGCCGCCCGGCCTCGGTGGACAGCCGCTCGAACATATCATGGACCAGGCTGTTC 5592375 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | |||| | ||||||| | ||| ||||| || |||||||| |||||| Sbjct 5592374 ATGATGTTCATGGCTTTGATCGAGATGCTGATGTCCGGGTGGACTTGCTTGAGTACCTTG 5592315 Query 1485709 TA 1485710 || Sbjct 5592314 TA 5592313 >seq1 Length=6951972 Score = 131 bits (144), Expect = 3e-24 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| ||||||||| |||| || |||||| | | Sbjct 3079695 TGAACTTGGTGACCGCCTTGGTCCCCTCGCTCACGGCGTGCTTGGCGAGCTCGCCGGGGA 3079636 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || | ||||||||||||||||||||| | ||| ||| |||||| || Sbjct 3079635 GGATGAGCCTCACGGCGGTCTGGATCTCGCGCGACGTGATGGTGGGCTTCTTGTTGTAGC 3079576 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || | ||||| ||| ||| || | || || |||| || |||| Sbjct 3079575 GCGCCAGCCGCGCCGCCTC-CTGCGCGAGCTTCTCAAAGATATCATTGATGAAGCTGTTC 3079517 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| | ||||| || | || |||| |||||||||||||||||| Sbjct 3079516 ATGATCCCCATGGCCTTGCTCGAGATCCCAATCTCCTGGTGGACCTGCTTGAGCACCTTG 3079457 Query 1485709 TAAA 1485712 ||| Sbjct 3079456 AAAA 3079453 >seq87 Length=830751 Score = 127 bits (140), Expect = 3e-23 Identities = 177/243 (73%), Gaps = 9/243 (4%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| || || || | | Sbjct 159624 TGTACTTGGTGACGGCCTTGGTCCCCTCGGACACGGCGTGCTTGGCGAGCTCTCCCGGGA 159683 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAG 1485586 |||| | ||| |||||||||||||||| |||| || | | || |||||| Sbjct 159684 GAATCAACCTCACCCCGGTCTGGATCTCGCGAGAGGTGACGGTGGGCTT---CTTGTTGT 159740 Query 1485587 TGCGCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | ||||||| || | || | | ||| ||| || | |||||||||| || ||| Sbjct 159741 AGAGCGCCAGCCGCGACGCCTCCTGTG-CGAGCTTCTCAAAGATGTCGTTGATGAA-GAG 159798 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 | ||||||| ||| | ||| ||||| ||| ||| || || ||||||||||||||| Sbjct 159799 TCCATGATCCCCATAGCCTTGGACGAGATCCCCGTGTCTGGATGGACCTGCTTGAGCACC 159858 Query 1485706 TTG 1485708 ||| Sbjct 159859 TTG 159861 >seq9 Length=3666672 Score = 127 bits (140), Expect = 3e-23 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| || |||||| |||| || |||||| | | Sbjct 2464924 TGAACTTGGTGACCGCCTTGGTCCCCTCGCTCACAGCGTGCTTGGCGAGCTCGCCGGGGA 2464983 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || | ||||||||||||||||||||| | ||| ||| |||||| || Sbjct 2464984 GGATGAGCCTCACGGCGGTCTGGATCTCGCGCGACGTGATGGTGGGCTTCTTGTTGTAGC 2465043 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || | ||||| ||| ||| || | || || |||| || |||| Sbjct 2465044 GCGCCAGCCGCGCCGCCTC-CTGCGCGAGCTTCTCAAAGATATCATTGATGAAGCTGTTC 2465102 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| | ||||| || | || |||| |||||||||||||||||| Sbjct 2465103 ATGATCCCCATGGCCTTGCTCGAGATCCCAATCTCCTGGTGGACCTGCTTGAGCACCTTG 2465162 Query 1485709 TAAA 1485712 ||| Sbjct 2465163 AAAA 2465166 >seq91 Length=799544 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| || || || ||||| ||| |||| || |||||| | | Sbjct 480278 TGAACTTGGTGACGGCCTTGGTCCCTTCGGACACGGCATGCTTGGCGAGCTCGCCGGGAA 480219 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || ||||||||||| || | | ||| ||| ||||| || Sbjct 480218 GGATGAGACGAACCGCCGTCTGGATCTCCCGCGAGGTGATTGTGGGCTTTTTGTTGTAGC 480159 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||| | |||||| ||| | | |||| |||||||||| || |||| Sbjct 480158 GAGCCAACCTCGAGGCCTC-CTGCGCTAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTC 480100 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| | || |||||| |||||||| ||||||||||| |||||| Sbjct 480099 ATGATCCCCATGGCCTTGCTCGAAATGCCCGTCTCGGGGTGGACCTGCTTGAGTACCTTG 480040 Query 1485709 TA 1485710 || Sbjct 480039 TA 480038 >seq74 Length=970821 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| || || || ||||| ||| |||| || |||||| | | Sbjct 199969 TGAACTTGGTGACGGCCTTGGTCCCTTCGGACACGGCATGCTTGGCGAGCTCGCCGGGAA 200028 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || ||||||||||| || | | ||| ||| ||||| || Sbjct 200029 GGATGAGACGAACCGCCGTCTGGATCTCCCGCGAGGTGATTGTGGGCTTTTTGTTGTAGC 200088 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||| | |||||| ||| | | |||| |||||||||| || |||| Sbjct 200089 GAGCCAACCTCGAGGCCTC-CTGCGCTAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTC 200147 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| | || |||||| |||||||| ||||||||||| |||||| Sbjct 200148 ATGATCCCCATGGCCTTGCTCGAAATGCCCGTCTCGGGGTGGACCTGCTTGAGTACCTTG 200207 Query 1485709 TA 1485710 || Sbjct 200208 TA 200209 >seq33 Length=1840579 Score = 100 bits (110), Expect = 5e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 |||| |||| ||| ||||| ||||| ||| ||||| | | | || ||| || |||| Sbjct 1734088 TTTGCGTTGTTCCAGGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGC 1734147 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 | |||||||| || | |||||||||||| | || ||||| ||||||||||| || ||| Sbjct 1734148 CAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTTTCAAC 1734207 Query 2035752 ATCAAGTACG 2035761 |||||| ||| Sbjct 1734208 ATCAAGAACG 1734217 >seq46 Length=1506775 Score = 96.9 bits (106), Expect = 5e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 2035634 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAA 2035693 ||| ||| ||| ||||| ||||| ||| ||||| | | | || ||| || |||| | Sbjct 1315688 TGATTTGTTCCAGGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCA 1315747 Query 2035694 GACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 |||||||| || | |||||||||||| | || ||||| ||||||||||| || ||||| Sbjct 1315748 AACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTTTCAACAT 1315807 Query 2035754 CAAGTACG 2035761 |||| ||| Sbjct 1315808 CAAGAACG 1315815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916165768082762